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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (13789 bp)
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PERCEVAL Exon Candidates (5 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +        389        435   2   Internal     47    50    Marginal
gtctctgatgtttatttttgcctagcaacccacagccaactgcttccccagctgccgtcc
acacgcgcctctctgcctccccttgtcctagcgactggcgagcggtcacttggtgtcagt
aaaccggggagggtgtgtggtggaggtgggagggcagccccctctttcgcccctgctcag
GGTCAACGAGCTCAGCGGCCGCCCCTCCCGGGACTTGCCTCTCCGAG
gtgaccctcgcacaactaagttatctacatgatgaattggggagaggggagtggctaagt
cgctgggaccaagaatggggggacggggaagcagtactgtctgtgagcagccattcagtt
cgaagagctgaaaatgcatttatgtttaggggtgcgcatggcaggggaggggtctctgcg

Exon  2 +       1094       1205   0    Initial    112    48    Marginal
agggcggcgggggcggggccgcgcgccggcgcctgtgtgtgagtgcgcgggggcgcgcgc
gcgcgggcccgggagaggctcccgagccaggcggtcttcggtcctcgcagcgcttccagc
tccccgcgcccctatgtgagggagacggggaggcccgcggcgcgcaggggagggcgaggc
ATGTGCACGGGCCGGAGGGTGCTGCAGCCGCCCGAGGAAGAGGAGGACGGCGGCGAGGAG
GAGAGCGGGGGGCTCGCGGCGGCGGGCCCCGGCCGAGGGGATGCAGTGGACT
gtgtgtgtctggctgtagcagacgcgaggcggcgacgaggcgccggggacccgcgcgagg
ggcggccgggaggcggcggcggcggccgccagaagtagcagcaggaccggcggcggcgac
ggcagccctgaaatgcattttcctctccagcggccatgttaaccaggaaaccttcggccg

Exon  3 +       4011       4123   1   Terminal    113    76        Good
taacgtgtgtgtaaacttcggtatgctgttaattattagatgcttgactttgaaggtgtg
aatttgggtttcgatggtggtttagttttgattttatttctataacatagcagatttcat
agtacaggaaaggttacaaggaccacagagtttatctggttctattctttcaatttatag
ATGAGGAAACAGACTCAGACAAGGTAACTGGTTTCATCAAGATTCCCCAGCCAGTTCATA
TCAAGGCCAGAGTGAAAGCCTACATCCTCCTGCATCTAGTTTTAATATACTGA
tggagactgctaattctaggaaattgtactagcctcattataaatgcaagaacctttgta
gatccatattcccatatgtctgtcagatttttataaatttttagttattatttccagagt
aattacacctaggaagaacttctagaatgaatggggggcgggagggcattaaggagataa

Exon  4 +       9354      10940   0     Single   1587    93   Excellent
ggtccatttttcaggatcacatgttttgtggcttttactcaaaccaaatgggattttgta
aatgtgaggttgggggcggtggtgttgttgggggttacttatacaccatttgaacagaca
ccacttcttttctatttatatttcctgtctgaattccagattggcggcagtaagcacaca
ATGAATGATCACCTGCATGTCGGCAGCCACGCTCACGGACAGATCCAGGTTCAACAGTTG
TTTGAGGATAACAGTAACAAGCGGACAGTGCTCACGACACAACCAAATGGGCTTACAACA
GTGGGCAAAACGGGCTTGCCAGTGGTGCCAGAGCGGCAGCTGGACAGCATTCATAGACGG
CAGGGGAGCTCCACCTCTCTAAAGTCCATGGAAGGCATGGGGAAGGTGAAAGCCACCCCC
ATGACACCTGAACAAGCAATGAAGCAATACATGCAAAAACTCACAGCCTTCGAACACCAT
GAGATTTTCAGCTACCCTGAAATATATTTCTTGGGTCTAAATGCTAAGAAGCGCCAGGGC
ATGACAGGTGGGCCCAACAATGGTGGCTATGATGATGACCAGGGATCATATGTGCAGGTG
CCCCACGATCACGTGGCTTACAGGTATGAGGTCCTCAAGGTCATTGGGAAGGGGAGCTTT
GGGCAGGTGGTCAAGGCCTACGATCACAAAGTCCACCAGCACGTGGCCCTAAAGATGGTG
CGGAATGAGAAGCGCTTCCACCGGCAAGCAGCGGAGGAGATCCGAATCCTGGAACACCTG
CGGAAGCAGGACAAGGATAACACAATGAATGTCATCCATATGCTGGAGAATTTCACCTTC
CGCAACCACATCTGCATGACGTTTGAGCTGCTGAGCATGAACCTCTATGAGCTCATCAAG
AAGAATAAATTCCAGGGCTTCAGTCTGCCTTTGGTTCGCAAGTTTGCCCACTCGATTCTG
CAGTGCTTGGATGCTTTGCACAAAAACAGAATAATTCACTGTGACCTTAAGCCCGAGAAC
ATTTTGTTAAAGCAGCAGGGTAGAAGCGGTATTAAAGTAATTGATTTTGGCTCCAGTTGT
TACGAGCATCAGCGTGTCTACACGTACATCCAGTCGCGTTTTTACCGGGCTCCAGAAGTG
ATCCTTGGGGCCAGGTATGGCATGCCCATTGATATGTGGAGCCTGGGCTGCATTTTAGCA
GAGCTCCTGACGGGTTACCCCCTCTTGCCTGGGGAAGATGAAGGGGACCAGCTGGCCTGT
ATGATTGAACTGTTGGGCATGCCCTCACAGAAACTGCTGGATGCATCCAAACGAGCCAAA
AATTTTGTGAGCTCCAAGGGTTATCCCCGTTACTGCACTGTCACGACTCTCTCAGATGGC
TCTGTGGTCCTAAACGGAGGCCGTTCCCGGAGGGGGAAACTGAGGGGCCCACCGGAGAGC
AGAGAGTGGGGGAACGCGCTGAAGGGGTGTGATGATCCCCTTTTCCTTGACTTCTTAAAA
CAGTGTTTAGAGTGGGATCCTGCAGTGCGCATGACCCCAGGCCAGGCTTTGCGGCACCCC
TGGCTGAGGAGGCGGTTGCCAAAGCCTCCCACCGGGGAGAAAACGTCAGTGAAAAGGATA
ACTGAGAGCACCGGTGCTATCACATCTATATCCAAGTTACCTCCACCTTCTAGCTCAGCT
TCCAAACTGAGGACTAATTTGGCGCAGATGACAGATGCCAATGGGAATATTCAGCAGAGG
ACAGTGTTGCCAAAACTTGTTAGCTGA
gctcacgtcccctgatgctggtaacctgaaagatacgacattgctgagccttactgggtt
gaaaaggagtagctcagacctgtttttatttgctcaataactctactcatttgtatcttt
tcagcacttaattttaatgtaagaaagttgttcattttgtttttataaaatacatgagga

Exon  5 +       9594      10940   0     Single   1347    76        Good
tttgaggataacagtaacaagcggacagtgctcacgacacaaccaaatgggcttacaaca
gtgggcaaaacgggcttgccagtggtgccagagcggcagctggacagcattcatagacgg
caggggagctccacctctctaaagtccatggaaggcatggggaaggtgaaagccaccccc
ATGACACCTGAACAAGCAATGAAGCAATACATGCAAAAACTCACAGCCTTCGAACACCAT
GAGATTTTCAGCTACCCTGAAATATATTTCTTGGGTCTAAATGCTAAGAAGCGCCAGGGC
ATGACAGGTGGGCCCAACAATGGTGGCTATGATGATGACCAGGGATCATATGTGCAGGTG
CCCCACGATCACGTGGCTTACAGGTATGAGGTCCTCAAGGTCATTGGGAAGGGGAGCTTT
GGGCAGGTGGTCAAGGCCTACGATCACAAAGTCCACCAGCACGTGGCCCTAAAGATGGTG
CGGAATGAGAAGCGCTTCCACCGGCAAGCAGCGGAGGAGATCCGAATCCTGGAACACCTG
CGGAAGCAGGACAAGGATAACACAATGAATGTCATCCATATGCTGGAGAATTTCACCTTC
CGCAACCACATCTGCATGACGTTTGAGCTGCTGAGCATGAACCTCTATGAGCTCATCAAG
AAGAATAAATTCCAGGGCTTCAGTCTGCCTTTGGTTCGCAAGTTTGCCCACTCGATTCTG
CAGTGCTTGGATGCTTTGCACAAAAACAGAATAATTCACTGTGACCTTAAGCCCGAGAAC
ATTTTGTTAAAGCAGCAGGGTAGAAGCGGTATTAAAGTAATTGATTTTGGCTCCAGTTGT
TACGAGCATCAGCGTGTCTACACGTACATCCAGTCGCGTTTTTACCGGGCTCCAGAAGTG
ATCCTTGGGGCCAGGTATGGCATGCCCATTGATATGTGGAGCCTGGGCTGCATTTTAGCA
GAGCTCCTGACGGGTTACCCCCTCTTGCCTGGGGAAGATGAAGGGGACCAGCTGGCCTGT
ATGATTGAACTGTTGGGCATGCCCTCACAGAAACTGCTGGATGCATCCAAACGAGCCAAA
AATTTTGTGAGCTCCAAGGGTTATCCCCGTTACTGCACTGTCACGACTCTCTCAGATGGC
TCTGTGGTCCTAAACGGAGGCCGTTCCCGGAGGGGGAAACTGAGGGGCCCACCGGAGAGC
AGAGAGTGGGGGAACGCGCTGAAGGGGTGTGATGATCCCCTTTTCCTTGACTTCTTAAAA
CAGTGTTTAGAGTGGGATCCTGCAGTGCGCATGACCCCAGGCCAGGCTTTGCGGCACCCC
TGGCTGAGGAGGCGGTTGCCAAAGCCTCCCACCGGGGAGAAAACGTCAGTGAAAAGGATA
ACTGAGAGCACCGGTGCTATCACATCTATATCCAAGTTACCTCCACCTTCTAGCTCAGCT
TCCAAACTGAGGACTAATTTGGCGCAGATGACAGATGCCAATGGGAATATTCAGCAGAGG
ACAGTGTTGCCAAAACTTGTTAGCTGA
gctcacgtcccctgatgctggtaacctgaaagatacgacattgctgagccttactgggtt
gaaaaggagtagctcagacctgtttttatttgctcaataactctactcatttgtatcttt
tcagcacttaattttaatgtaagaaagttgttcattttgtttttataaaatacatgagga

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