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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (18901 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +        226        268   2   Terminal     43    46    Marginal
tgcctgtaatccctgctacttgggaggctgaggcaggagaatcacttgaacctgggaggc
agaggttgcagtgagccgagatcgcgccattgcacttcagcctgggtgacaagagcgaaa
ctctgtctcaaaaaaaaaaaaaaagggcagaagtggacttggccacacacttaatcttag
ATTCAAGGATGAAGAGAGCACCAAAGACCTGTACACAAATTAG
ctgactcagaggccaaggtccttctcattttgtatctaatagctcccctcccctctccaa
cacggatgtaggacagagagcaaaatgagaggaagttggaaataggtgaataacagctga
aagccaaggccacagtgtgctcaccagataacataaaaattttcaagctatagttacaga

Exon  2 +       9862       9957   0    Initial     96    48    Marginal
ccctctatatgaaaaataaaacgtcagaaagtgtgcaatccacctctctccagccttaaa
ggtgcaaaaagcctcagagtcacttcaaaagtgttctgactttggagacatattccaagg
actggctcaacttaggttctatgttatgcaactagacattcagctaacaatttggcagtc
ATGGCGAGGAAACATACACATGAGGCTCAATTCAAGGGTAGTAACTTAGTACGAAATGCA
GTTGGTTCAAATGATTCTGGCTGGGATGCCAAATAT
gtaattgagatgtttatgttaccagtattattagttccctttttcctctgttaaatagct
atttacacacacacacacacacacacacacacacacacacacgtatatacaacacactag
gacaccaagtgggtatttttgcaacccaaactaaaaatccataagcatatgcatggcaaa

Exon  3 +      14268      14715   2   Terminal    448    94   Excellent
ggaggttgtggtgagctgagattgcaccactgcactccagtctgggcaacagtgtgagac
tccatcttaaaaaaataaaataaaataaaataaaataaaaaaagaagaggggagcaggaa
aagatttctaagatctctctaaatgtggcatgacagtgtgggctgctttttgtatttcag
GAGAAGAATCGAACCCTGGGAGTTTGACGTCTTCTATGACCCCAGAGAACTTCGTAAAGA
GGCCTGTCTGCTCTACGAAATCAAGTGGGGCATGAGCCGGAAGATCTGGCGAAGCTCAGG
CAAAAACACCACCAATCACGTGGAAGTTAATTTTATAAAAAAATTTACGTCAGAAAGAGA
TTTTCACCCATCCATGAGCTGCTCCATCACCTGGTTCTTGTCCTGGAGTCCCTGCTGGGA
ATGCTCCCAGGCTATTAGAGAGTTTCTGAGTCGGCACCCTGGTGTGACTCTAGTGATCTA
CGTAGCTCGGCTTTTTTGGCACATGGATCAACAAAATCGGCAAGGTCTCAGGGACCTTGT
TAACAGTGGAGTAACTATTCAGATTATGAGAGCATCAGGTAAAAACAGTAAACAAAGAAA
CTTCATTGTTTACAACAGACTGTGGTGA
tagtagctgtttttaggccagaagattggttagcccaggctggaagtctcagaagtaaaa
gtccaaaataatgtcataaaggactaggtctgaaattcatgacaaggaaagttacaaaaa
tacaactcctggctacgcatggtggctcatgcctataatcccagaactttgggaggccaa

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