GENSCAN 1.0 Date run: 15-Jan-104 Time: 02:31:57 Sequence ETV6_1 : 243896 bp : 43.28% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Intr + 3563 3781 219 0 0 46 85 75 0.021 1.27 gtttgtttaattcagtgttccaataataagcactagagatcaaggactgggattattcca ggtcatctgaaatgttctggtgatgtgtgctgcgtttcatttagtccttgggatgtggta cggtgactgcataataaaaaatgtttgctggtaacccacaagcaagttgcttgcttctag AGTCCAGTAAACAATATGCTTTTCTGTGTAGTGAAGAACGAATGTCAGAGGTTTTCAAGG ATGAGCTGATGAACCTGATATACCGAACTCCTGTGACACAAAAGGCTCTCACTGTGGAGA GGTTTTTCCCAGTCCTCCTCTCCACTCCTGAAACCGTCCTCACTTGCTTTCATTCCTTAC AAGTAGCGGGTCAGCAGGCAGACAGTTCCTCAGCGGCTG gtgagatgcagccacagagggaagtactttgtttatttctgagcagtgcctgctctgcta gaaaagagtagtgtccgatttgggtggagtttccaaggtgaaagtttctgaattggtcaa tcagtgacgcctttgtaaagatggctcatgtggtggtcgctcgcaatgaatgcctgataa 1.02 Intr + 12719 12826 108 0 0 67 73 64 0.078 3.06 gcaggacactctcactttgtaccttttgatctggtctttattcaaagtggggtgaaccca gtaggagagttgttgttttggggataaagtctgggtgacagattcttcaggctgggtaag tctcctgttctccccgactttgagacctgaatgacctgatttggctgactacacctccag TCCCCTGGACAACAGCCAGCTCCTTTGATTTTGTGCCATTTAGTCCTTCCCTTCATCTGC TGACGCTGATACTTTCGGGTGAGGTGGAAGGAGAGAGCATACCTGTTG gtgaggtaagagtgttttccttcagagaaccaaagaaacaaaggctccctttctgaattt tgtgttctgcctctttgcatttctgaggctccttgtgtctggcagggctgtgagtgagga gatgagggtgtgctcctctgcaggcagaagtcagctgtaggtcagatgtggctttggaac 1.03 Intr + 15233 15359 127 0 1 80 39 37 0.176 -2.26 gtgtgtttttgataacactcttaagtatttaatagctgctttaaggatttgtgccttagt gtacttggatgaataggtaaatcacctccccatcagcaaactagcgtttgggttcccacg ttggcaaagcagggttcctgttatgtgtctggtcatatttgaacttcttttcacattcag GTGACATAGTTGAACATCAGTCCGTGCCAGTTTCTGCTACTATTGGGTTTTTAATGGAAG AGAACTCTTTCTTGTTACTACGATGCCATGCTTCTGCTGTGTTAGCAGCTGCTGTATTGA AAAACAG gtgtctcttataatcctctgactggatcagtttgctagcctggcagagtcttattgttat tgtttttatttatttatttttgtcccacataagtcagaaactgccaagagatgttgatga gtgggattagtatgagaggagatggcagcttttcttggtggaggtttctgttacaagaat 1.04 Intr + 17916 17971 56 0 2 91 80 75 0.355 5.62 aatagctcgttttctccctatttctgttgccattgaggtacagctgggattcagggcatt aggatatgtgaaaacttttagcttcctgaacccaaccagaccccagcaagagtcctttta cagtttccccgaaaccgtcacaagttttcctgaccgcctgctgggggctttctgttgcag ACCTACGCGGCAGCTGCCTGCCAGCCCTGCCAGATTTGACTTCATCTTGGCTGCCG gtgggtcagtctccacgaggcttctcttggcctgtctgtccactcagggcatttaagggt cctcttgctttgctcacatgggctcctcgagggcttgtgcagtaggttgagagttgttac gggtgctgatctggaccacttagggagcagaaagcataggtctgtatatgaatgtgaaaa 1.05 Intr + 25919 26097 179 0 2 86 87 56 0.086 4.94 tgtgtgtgtgtgtgtgtgtgtttggtgttttccccatgaagccctgattgtgcgaccctg ggtgagccagctgcttccgctgttttccaggaaagcatgagtgtccaccacctagagaga tgatgatgtgagaaggggcagggagagacctctctggctgccactctctcactgccccag GAGCGGAGGCCCCTGGTGCTCAGGAGTTCTTTGGCTGTGTCCGGATCCACCAATTCCCCG CTTCCCTAAGGATGACGGGTAAATCTGGTGAGACCCGCTGCCCTCCTAATGTTGGAGGAA AGCTGGAGCCCCTCAGTCAACATTTATGGAAGGGATTTAATGCATCATGGGCTGTGAAG gtacagccaggccctccgtcagctccctgagacaggccttgtctttttgcacgcatatgt ctgttaatagttgtagacctagctgtagccatgggggtaagcctagtcctccagcccctg agagtttattaccacaaggagtgagaacaccaggatgtgtttttttagatgttcttctgt 1.06 Intr + 55223 55299 77 1 2 84 78 64 0.118 3.31 tattttgaaaatagaagaaaaaggaagaaaggaggaaagacaagttatctagtggagacg atgaattttcaggtcatccttctagtttttattttagacttgtgtctttagttgaaatta ttacaacttgcatgtattttgtctgtttactcattatttcgtctgtctcaccgttccaag GTAAGCACCGTGAAAACGGACTGTGTCTTTTTAGTTCTTTACTGTGTTTCTGCCATCAAG CCCAGTGTTGACACATG gtaggtactcaagacatgctggctgaatgaatcagtgagtagtgaaggtggatcatgggg agaagagtgctgcaaataccagagagaaggagaagaaggaagtggaggggatagcggaag aaggggaagaggagtgagtttacaaggcctttttttctttttttgacagagtctcactct 1.07 Intr + 82093 82129 37 1 1 94 67 32 0.064 -0.04 gctgtttgctcttccctagaatattataatgttcaatttatgcctccaggagaccagaga cacacgtttcccaaatgtgggtacaggtggctttaagctgtttctgtgagtagaggccca gtgacatgttccccagtgtaaccccctccttggtttcacatcccctctacccgattctag GCCAAGCCCCTCCAGTGTAGTTGGTGACCCAGAACAG gtgaaagtgaggctgccttttgtagcactgctctttgtgaatgggaagtgctgctgggga gaaatgattttaagtgtgagctttgctgttaggggcagccctctttctccactgcaataa gaagagtcatgactaagtctagaaaggcaggttttgatctttaggatactgtgatgtatg 1.08 Term + 83807 83863 57 1 0 102 46 52 0.234 0.09 aagtacaaaccttttcaccgacttggggagtttccccccattgtatcccaccccatcttt ttctgccatcgtgcactgtgtcgtttgaatgtgctgctttgtcagggctgggggcttcct tggtgctccagcttggccacatccgacacacagaccaccccgtcctccttctgcctctag AGGACCAAGAACAACCCTTGTTCTGAAAGCACCCTGTCCCTGAGCCTGAACACATGA ccctggatgtcagaagatgctcttctccatttcaattgcccaattccagctctgtaatca ttatgttaaatgatacaagtttcaaaaaatatatatttctaatagactttctattatctt ccttaaatccacagtgtcactttcattcttactcctcattttggggtgaaagtgtagaaa 2.03 PlyA - 86709 86704 6 1.05 2.02 Term - 99123 99015 109 2 1 55 39 127 0.746 2.48 2.01 Init - 104445 104378 68 0 2 51 89 118 0.832 8.74 2.00 Prom - 108590 108551 40 -2.96 3.05 PlyA - 108997 108992 6 1.05 3.04 Term - 110087 109977 111 2 0 58 49 119 0.949 3.56 3.03 Intr - 110396 110304 93 2 0 109 86 17 0.887 3.76 3.02 Intr - 114920 114724 197 0 2 48 56 72 0.542 -0.87 3.01 Init - 117738 117594 145 0 1 66 70 92 0.488 5.64 3.00 Prom - 122171 122132 40 -0.66 4.01 Init + 125003 125241 239 1 2 75 34 227 0.580 11.48 ttgtaagaggactatacttggtatcttggaaaacataaacagaccctagactgtctaccc caagtctgggaaggcggtcctctgaagctgaggttctcctggaactcccttccacagggc tgcgttgcaaatgccattgtggaggcatcacccgatgtggtggacctgaacattggggaa ATGCAGTGCTGCCTGCTGCTGCGCTGGCTGGCATCTGCCCTCCTCCGTCTCCTGGGTGCT GCCACAGAGAAGAGAGAGAGAGTGAAGCGGGCAGAGACTGGCTGTTGCCATCACACAACT GAGGGCGGACCTGGAGCTCAGCCGGCTGAGGGTTTGAGAGACCGTTGGGAGCAAGACCCA ACCACAAGGCCCATGGAAGAGGAAGTTGGCAGATCTCAGAAAGGGGAGGAAAAGGAGAG gtgcttatttgttcatcttgtttttgcttttaaggaaaggaggagagttaaatgagaaag gagggcgagttgagaaggttctgagcagtttcaggtccacggttgagcaatgttcttcct ggtcaacaaactgcctggatttcattttggcctgacaacagccccaccacctagggaact 4.02 Intr + 146702 146810 109 2 1 73 85 30 0.000 1.49 ggacgatgcatggaggaggggcaccctccaaggaaaccaggccaatagagccaaagtgaa caatttcagtcatcattgggaaccatgatagattatgtagcactttaatgattgatttcc taaaaaccattcatgcagtctttggaagttcagcttgtcacttactggcgtgccctccag GGCTTCTGTCCACATCGATTTCACCACTACATCTCCACCCATGGAAGGCATGGGCCAAAC CCATTCATATTCCAGAGAACAAGGTGCAGTTTCCATGGTATACAGAAAG gtaatattgtacagtgggcaataacattccagttccggctctgctacttcctacttctga gcaacttggaaggttgcctaacctctccaaagacctagataaaatggggttaagaatagt gtccacttcatagggtggttcgaagaaataagtgaaaatataaatgtaaaacacttagta 4.03 Term + 166662 166733 72 2 0 101 50 75 0.257 2.91 aggcaactggtccacatggagagtcctcttggaggacaccgacccgtggtgccacctctg atttgcaagttggtgcattagacaagccctggaatgacagccagaagatctctattctga tcctggccctccgtctacttgggccactttgatcaagccatttagccccgttcccttcag GTGGCTCAGCTGGAAGTAAGAATGATAATGCCCATGCAGCTGACTCACCTGGTGACTGTG AAGGCCAAATGA gatgatgtgtttgagagcactttgcaaactgtggagtattgccagccatttctcctaatt tggctcagggcagaaagacatccaggtgaagagcttgatgtgtgtgatgacttaggcttg gggatatttgtgaacaggacacaacaaataaattcgtttgacgggcagagggacagtatg 5.01 Init + 181597 181671 75 0 0 63 83 59 0.724 3.99 tccattatttcctttaacccaggggaagttcactgggtaatacagaaagcctggagctgg agttttggtcttaggttcattgtgaccttgggaaagtccctcgatttctgaacttcagtt tcttctgaaaatacagttgtgccagctttagctccctcgcagaatagatgatggcatgac ATGGATGCGGAAGCATCTGGTAATGTTTTGAACTGCACAGAGCTGAGTGTCCTGACCATC AAAGCCAGAGCTGGA gtaagtgatcagatgtgtcggggaggagaggggtgccaatcacagactgcagagctggct cagatgtggactgcctaggaatggaaatctttggctgtacagtctggcattaaacctggg gactgttatgtgccaggcaccgtgtgcaaatcactgcaaaatccccttcagctacatgca 5.02 Intr + 181907 181997 91 1 1 74 76 24 0.580 -0.63 tggctcagatgtggactgcctaggaatggaaatctttggctgtacagtctggcattaaac ctggggactgttatgtgccaggcaccgtgtgcaaatcactgcaaaatccccttcagctac atgcatggacatgttaactcttaacacatgtacctaacaattcacaatttcatctcccag AAGGTGGAAGATGCATTGAGGAGCATTGCTAATTTGCACTCAAATCTGACAAATGAGGAA TTGTCTGGAAAAGTAGAAATGATAGCAGAGG gtgagaataaaaacatgattttaggattggggaagggaaatgagagacaagaacagatgt gttttcttgacttaagacaaatttttaaaatgtagggaaaagtatttatgatctcatgat ctgaatgctgagacacaactcagagtcatttgggctgctcttgaaaatgaaatcctgact 5.03 Intr + 190237 190401 165 2 0 99 94 168 0.976 18.43 gaagcccccagtggggcggctcaaacaagggctggagaggggactcagagttgaacataa gggctcttgagatgtggagactcattttgttaactattcagagaccttctccctttattc cagctgtctaactgacaagacctttctctctttctttctgcctcatgctctctccaacag GCTTGCAGCCAATTTACTGGAGCAGGGATGACGTAGCCCAGTGGCTCAAGTGGGCTGAAA ATGAGTTTTCTTTAAGGCCAATTGACAGCAACACGTTTGAAATGAATGGCAAAGCTCTCC TGCTGCTGACCAAAGAGGACTTTCGCTATCGATCTCCTCATTCAG gtgagagtctggactcttggcatatgcccaacttggaaagtctcttagttagtggttggt ctttaacacccctcacccggcccaagaaatcccaacagtgagtcatcacaaggaagggat gacgatggaaggaagttgaaggaagattatgctagcatgagccagtttgagggaagaaga 5.04 Intr + 204524 204658 135 0 0 138 79 1 0.623 4.74 tgaccttttgagtttcaagtgctgcattctgtgccccatgagcttggtgagggtaggagg tggcaggtgcgctccaattgtatctttggcaccgtgccaggcacttagctgctgctccgt agatcgttgttggaaaaacatctttccatttctcgatttccctttcctttttctttccag GTGATGTGCTCTATGAACTCCTTCAGCATATTCTGAAGCAGAGGAAACCTCGGATTCTTT TTTCACCATTCTTCCACCCTGGAAACTCTATACACACACAGCCGGAGGTCATACTGCATC AGAACCATGAAGAAG gtactggaagaggtttctcttttcttgcctgaggtttagacaaatccaggaagtttaatt gttaacttgataagctggtcttcttcgtgtaagttcacttttcattcagtagacaattat tgagtgcttactatgtacaaaatacactcttggttccctgaagctcacgatcaaagcgaa 5.05 Intr + 220521 221066 546 1 0 114 109 335 0.753 31.05 aaaaaaaaaaaatatgcacccttcaaattgttaagcagtgaaaaagacactgcattctgg ggagaaaggtcctttacacatacctacacgctcctccatttaccgcctgtagagccgcag ggagtttcctgtcctgccaactcactggggtctgtgattgtctttccctctgctccacag ATAACTGTGTCCAGAGGACCCCCAGGCCATCCGTGGATAATGTGCACCATAACCCTCCCA CCATTGAACTGTTGCACCGCTCCAGGTCACCTATCACGACAAATCACCGGCCTTCTCCTG ACCCCGAGCAGCGGCCCCTCCGGTCCCCCCTGGACAACATGATCCGCCGCCTCTCCCCGG CTGAGAGAGCTCAGGGACCCAGGCCGCACCAGGAGAACAACCACCAGGAGTCCTACCCTC TGTCAGTGTCTCCCATGGAGAATAATCACTGCCCAGCGTCCTCCGAGTCCCACCCGAAGC CATCCAGCCCCCGGCAGGAGAGCACACGCGTGATCCAGCTGATGCCCAGCCCCATCATGC ACCCTCTGATCCTGAACCCCCGGCACTCCGTGGATTTCAAACAGTCCAGGCTCTCCGAGG ACGGGCTGCATAGGGAAGGGAAGCCCATCAACCTCTCTCATCGGGAAGACCTGGCTTACA TGAACCACATCATGGTCTCTGTCTCCCCGCCTGAAGAGCACGCCATGCCCATTGGGAGAA TAGCAG gtgagtgagttcccctctcgccgctccagcatcatggggacctgacaaagtcccactctc ccctgtgatctttgcagccagcctcgcaccattcccaattaggcgccctccaaggctctc tgagggcaattggaggcttctgcttggatgaggctaaatccctaatggcttggttaatga 5.06 Intr + 235542 235684 143 1 2 98 93 118 0.820 13.37 caggacctccctccatctttctgggcctccgtttcttcccggtaaaacaaggaagttagt tagacaatcagtcaacccaagctaggcagaagcagttgctggattcttttttgattcttc tggttagtgcctcaacaagaaacattttcaacagtgttttcttgcccttttcctctgtag ACTGTAGACTGCTTTGGGATTACGTCTATCAGTTGCTTTCTGACAGCCGGTACGAAAACT TCATCCGATGGGAGGACAAAGAATCCAAAATATTCCGGATAGTGGATCCCAACGGACTGG CTCGACTGTGGGGAAACCATAAG gtaaaagggcagcagatatctgctccataaactagtgccaaaatgaagtccttatccctg gattggaggataatcgtctgtcttctgctttttacgtctgcccatacttatttagtttat tccttgctgggcaagcaattaggcagttgcaaagggaaggaaataattaaagatgcatct 5.07 Intr + 237023 237123 101 1 2 52 69 39 0.573 -2.69 taaagggtggggacagatgtgcctggaaggcagccgattagcaggtagcttcccaaactg gcagggccacaggcagcagctgaagagcttttattttaatagctcccgcagtgccttttc tgaggttcatttcattgtgtctttgtgctttttttctcccttcctcctttgaacaaacag AACAGAACAAACATGACCTATGAGAAAATGTCCAGAGCCCTGCGCCACTACTACAAACTA AACATTATCAGGAAGGAGCCAGGACAAAGGCTTTTGTTCAG gtagcacttcctttttctcctttccttcttttgggaggatgctgttttctttaaataacg gggagtggggggagactgttaagatctctacctgcctatcggatacccaaagccaatcat tgctacaaactggataccaggtactggtttgttaggatttaaggaaaatatttttttaac 5.08 Term + 242038 242143 106 1 1 92 49 134 0.978 7.78 acagtcagagaaaggagtaccttttcctaatttgcactaagttaacattaatctcggggt tcagtagctctccagctgtataagatgatggagtctttctttatatacaggctagagttc agagtgaagacagctttaggaaaatggaatctcttacctcctccacttcttcttccaaag GTTTATGAAAACCCCAGATGAAATCATGAGTGGCCGAACAGACCGTCTGGAGCACCTAGA GTCCCAGGAGCTGGATGAACAAATATACCAAGAAGATGAATGCTGA aggaaccaacagtccacctcagcgggccagcagcccagggaacccctgcccaccaggatt gctggaagtgtgacggagcaggcgggctgaggagagtggaaaaggaagcgacccagaaat ggcagggacacttctcttgcagaccaagagggaccctggagcaccttagacaaactaccc Predicted peptide sequence(s): >ETV6_1|GENSCAN_predicted_peptide_1|286_aa XSSKQYAFLCSEERMSEVFKDELMNLIYRTPVTQKALTVERFFPVLLSTPETVLTCFHSL QVAGQQADSSSAAVPWTTASSFDFVPFSPSLHLLTLILSGEVEGESIPVGDIVEHQSVPV SATIGFLMEENSFLLLRCHASAVLAAAVLKNRPTRQLPASPARFDFILAAGAEAPGAQEF FGCVRIHQFPASLRMTGKSGETRCPPNVGGKLEPLSQHLWKGFNASWAVKVSTVKTDCVF LVLYCVSAIKPSVDTWPSPSSVVGDPEQRTKNNPCSESTLSLSLNT >ETV6_1|GENSCAN_predicted_peptide_2|58_aa MRKADKKDTAGVNGFGGQYQQHRCLEKLPEKADACTVVNFYRFNRRNLSYGKLFIEIY >ETV6_1|GENSCAN_predicted_peptide_3|181_aa MGKATKQGSKKQAPGLAAGCSRELFKMELVAANGGGGRKGSMKKAVKKANKEVPDMRELH SVCTVPMLQYPVVFQVLFPDHWGGRNRHSSRNNHRSFVKQVSGITAIRRSQRKHRNQGHF VRADAGGTALNVHRAHCMKCEVKEKLFEAANQGPRTATCAAGKVESFKHLDVKSEGTQKK A >ETV6_1|GENSCAN_predicted_peptide_4|139_aa MQCCLLLRWLASALLRLLGAATEKRERVKRAETGCCHHTTEGGPGAQPAEGLRDRWEQDP TTRPMEEEVGRSQKGEEKERASVHIDFTTTSPPMEGMGQTHSYSREQGAVSMVYRKVAQL EVRMIMPMQLTHLVTVKAK >ETV6_1|GENSCAN_predicted_peptide_5|453_aa MDAEASGNVLNCTELSVLTIKARAGKVEDALRSIANLHSNLTNEELSGKVEMIAEGLQPI YWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPHSGDVLYELLQH ILKQRKPRILFSPFFHPGNSIHTQPEVILHQNHEEDNCVQRTPRPSVDNVHHNPPTIELL HRSRSPITTNHRPSPDPEQRPLRSPLDNMIRRLSPAERAQGPRPHQENNHQESYPLSVSP MENNHCPASSESHPKPSSPRQESTRVIQLMPSPIMHPLILNPRHSVDFKQSRLSEDGLHR EGKPINLSHREDLAYMNHIMVSVSPPEEHAMPIGRIADCRLLWDYVYQLLSDSRYENFIR WEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLFRF MKTPDEIMSGRTDRLEHLESQELDEQIYQEDEC