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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (8859 bp)
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PERCEVAL Exon Candidates (13 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +        961       1139   1   Internal    179    51    Marginal
gattgctgctggagtccgagtctcaggcccagagtgggtgcgatggtcttgcttgcaccc
tgtatcccccggcagacgcccgggaactctactaagtgggtgaccccagagagctcgccc
ccacactccgactccgagtccagcactcggtccactgcacagggacctcgcgccccacag
CTGCGTCCTCTCTGACCTTCGCAATCCGGTGCGCGGCCCGCGGAACGCCCCGATCTCCAG
GGGCACGGAAGGCCGAGGCGTGCCGGGGGAGCCAGGAGCAGCTGGCTGGCGGGCGCCGCG
GGCCTCCCCGGTCACGTGACACCCCGGACAACGTGCGCCGTCACGTGACGGCAGAGCCT
gtgagcgtttttctcacgtgacggaggcgcctgcacgtggaccaatggggaggcgggggc
ggggccggcaggggcggtgcgcgggaagggaccccggacccggaggtcgcggagagctgg
gcagtgttggccgctggcggagcgctggggcagcatgaagtgcctggtcacgggcggcaa

Exon  2 +       1294       1327   0    Initial     34    68    Marginal
tgcgccgtcacgtgacggcagagcctgtgagcgtttttctcacgtgacggaggcgcctgc
acgtggaccaatggggaggcgggggcggggccggcaggggcggtgcgcgggaagggaccc
cggacccggaggtcgcggagagctgggcagtgttggccgctggcggagcgctggggcagc
ATGAAGTGCCTGGTCACGGGCGGCAACGTGAAGG
gtgagtgcaggtcggcctggcagcggcggtgcagcagccgcggagccgccagcctaaccc
ccttccgctcttctccccgcagtgctcggcaaggccgtccactccctgtcccgcatcggg
gacgagctctacctggaacccttggaggacggggtgaggggctagggtgtggggggcggg

Exon  3 +       1410       1480   1   Internal     71   100   Excellent
accccggacccggaggtcgcggagagctgggcagtgttggccgctggcggagcgctgggg
cagcatgaagtgcctggtcacgggcggcaacgtgaagggtgagtgcaggtcggcctggca
gcggcggtgcagcagccgcggagccgccagcctaacccccttccgctcttctccccgcag
TGCTCGGCAAGGCCGTCCACTCCCTGTCCCGCATCGGGGACGAGCTCTACCTGGAACCCT
TGGAGGACGGG
gtgaggggctagggtgtggggggcgggtgggactccagccgggagcgggtaacccggact
agagtctcgcccccactaggcgggatgaccgctggcagatttgtcggcaaagtttcagtt
tcttagtctggcggctgtcatcttcccaggccggtgtgtgaattgaggaaagctgtcctg

Exon  4 +       1903       2031   0   Internal    129    61    Marginal
tcctctgcggcagcagcgccggggccgactctgaaggcttccatggggaaaggagggttt
ttcagcaggtggtggcggagcgggaggacgatagggcaagtgtgtgagcagaagcagcca
gagggctgggtctgtggctgccccctgaccacgtccctctccctgctcttcgtggcccag
CTCTCCCTCCGGACGGTGAACTCCTCCCGCTCTGCCTATGCCTGCTTTCTCTTTGCCCCG
CTCTTCTTCCAGCAATACCAGGCAGCCACCCCTGGTCAGGACCTGCTGCGCTGTAAGATC
CTGATGAAG
gtgaggcccttccctcagcagtggcactactccaccccaggaatctccaccagctgtgcc
tctgccctggggtactcagtagatgctaagtggggagagagacacgtgcaagcccaatcc
atgcaaaacacagggagggccatggtaaaagcatcacagcggggacctgagagggtggtg

Exon  5 +       1975       2259   0   Internal    285    71        Good
tggcggagcgggaggacgatagggcaagtgtgtgagcagaagcagccagagggctgggtc
tgtggctgccccctgaccacgtccctctccctgctcttcgtggcccagctctccctccgg
acggtgaactcctcccgctctgcctatgcctgctttctctttgccccgctcttcttccag
CAATACCAGGCAGCCACCCCTGGTCAGGACCTGCTGCGCTGTAAGATCCTGATGAAGGTG
AGGCCCTTCCCTCAGCAGTGGCACTACTCCACCCCAGGAATCTCCACCAGCTGTGCCTCT
GCCCTGGGGTACTCAGTAGATGCTAAGTGGGGAGAGAGACACGTGCAAGCCCAATCCATG
CAAAACACAGGGAGGGCCATGGTAAAAGCATCACAGCGGGGACCTGAGAGGGTGGTGACG
CTCAAGTTCGTCAAGAAAGGTAAGCACGTCTTTTGGCCGGGCGCG
gtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacgaggtca
ggagttcgagaccagcctggccaacatggcgaaaccccgtctctactaaaaatacaaaaa
ttagctgggcgtggtggcacgcgcctgtaatcccagctactcgggaggctgaggcaggag

Exon  6 +       2745       2859   0   Internal    115    98   Excellent
ggcattccaagcataaggaagagcatgaatgaggcctagaaggatgccagtgcccgaggt
gacgtgggagcccttttcccagagttacatgctgggcccatgatgggtgtgggcctgcat
gggacaggagagcttgttgcagagatgtgatgctaggctgaggtgtcttatcccatgcag
TCTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAGAAGACGGTGGAAAAATGCTGC
ATCTCCCTGAATGGCCGGAGCAGCCGCCTGGTGGTCCAGCTGCATTGCAAGTTCG
gtgagtgggcagccggccagccaaggggtgcctcagcagggaggtcggcgaggcccactg
agaccctatcgcccatccaggggtgcggaagactcacaacctgtccttccaggactgtga
gtccctgcaggccgtcttcgacccagcctcgtgcccccacatgctccgcgccccagcacg

Exon  7 +       2940       3039   1   Internal    100   100   Excellent
ttccgctcactggcgatgctggagaagacggtggaaaaatgctgcatctccctgaatggc
cggagcagccgcctggtggtccagctgcattgcaagttcggtgagtgggcagccggccag
ccaaggggtgcctcagcagggaggtcggcgaggcccactgagaccctatcgcccatccag
GGGTGCGGAAGACTCACAACCTGTCCTTCCAGGACTGTGAGTCCCTGCAGGCCGTCTTCG
ACCCAGCCTCGTGCCCCCACATGCTCCGCGCCCCAGCACG
gtgagcacacccctgccctcagctcagccccgggtctctctcttccttctttggggcccc
aaggggttgattttagaaggtacctctttcattttccctacagagtttctgtgaacctca
aagacatcccatggcccgctatgtgctcaggtccttacctggctctttaaaggcagacgg

Exon  8 +       4965       5074   2   Internal    110    89        Good
caggtttgagcaaccactgcaaccagtcccctccctgccaccttctctgggcctcatcca
cggtgcgctaggcctgcgcacatccgtgcgtgtgcatgtgtcacccccacctcaggtcct
ccgagagcaaagccctgggcagggccaggcatttcgggtaatgctccaccctgttcacag
GGTTCTGGGGGAGGCTGTTCTGCCCTTCTCTCCTGCACTGGCTGAAGTGACGCTGGGCAT
TGGCCGTGGCCGCAGGGTCATCCTGCGCAGCTACCACGAGGAGGAGGCAG
gtgagggggctggacgtggcctgggacagcagagtggcaggtgggagaggggcggggccc
aggttactcctgttcttccccaacagacagcactgccaaagccatggtgactgagatgtg
ccttggagaggaggatttccagcagctgcaggcccaggaaggggtggccatcactttctg

Exon  9 +       5161       5275   1   Internal    115   100   Excellent
gttctgcccttctctcctgcactggctgaagtgacgctgggcattggccgtggccgcagg
gtcatcctgcgcagctaccacgaggaggaggcaggtgagggggctggacgtggcctggga
cagcagagtggcaggtgggagaggggcggggcccaggttactcctgttcttccccaacag
ACAGCACTGCCAAAGCCATGGTGACTGAGATGTGCCTTGGAGAGGAGGATTTCCAGCAGC
TGCAGGCCCAGGAAGGGGTGGCCATCACTTTCTGCCTCAAGGAATTCCGGGTGAG
gttcctcccaggcgctcgccgtcctgtcctccctgcccagctcagcccagcccggggcct
cacctgctacctctttcctcccaggggctcctgagctttgcagagtcagcaaacttgaat
cttagcattcattttgatgctccaggcaggtagttcccagccttgggacagggaagggct

Exon 10 +       5512       5649   2   Internal    138   100   Excellent
gcctcacctgctacctctttcctcccaggggctcctgagctttgcagagtcagcaaactt
gaatcttagcattcattttgatgctccaggcaggtagttcccagccttgggacagggaag
ggctctgggatggcaggagctgaatgggatgacctagcttgggccccctcccctgcccag
GCCCGCCATCTTCACCATCAAGGACTCTTTGCTGGACGGCCACTTTGTCTTGGCCACACT
CTCAGACACCGACTCGCACTCCCAGGACCTGGGCTCCCCAGAGCGTCACCAGCCAGTGCC
TCAGCTCCAGGCTCACAG
gtgagggcacctccccccaactcctcctctctccatgtctgtgcactccagcctgagact
gcaactcctagcttctgcacctccccgcaatgtgttctctcccgccccttctctttctat
caggccccagcccctaaccctatagtgctcacagctgccagccctgcagactcagccttc

Exon 11 +       6428       6635   2   Internal    208   100   Excellent
ccccctccaggaagtcaccacttaacccctgcatcctctcctctccagccaaatcaggaa
gtcataaaaccaagagatctccagtggtcgggggccccagagctcccttcgagccctcca
aggtggggccctgcctctgctcccccagtcccctccctgatactccgattctgcctacag
CACACCCCACCCGGACGACTTTGCCAATGACGACATTGACTCTTACATGATCGCCATGGA
AACCACTATAGGCAATGAGGGCTCGCGGGTGCTGCCCTCCATTTCCCTTTCACCTGGCCC
CCAGCCCCCCAAGAGCCCCGGTCCCCACTCCGAGGAGGAAGATGAGGCTGAGCCCAGTAC
AGTGCCTGGGACTCCCCCACCCAAGAAG
gtagggactggaggtggaggcaggggtgggaggtagggaagggagcagcctccagaactc
acttgttctctttccagttccgctcactgttcttcggctccatcctggcccctgtacgct
ccccccagggccccagccctgtgctggcggaagacagtgagggtgaaggctgaaccaaga

Exon 12 +       6713       6791   0   Internal     79    98   Excellent
cctttcacctggcccccagccccccaagagccccggtccccactccgaggaggaagatga
ggctgagcccagtacagtgcctgggactcccccacccaagaaggtagggactggaggtgg
aggcaggggtgggaggtagggaagggagcagcctccagaactcacttgttctctttccag
TTCCGCTCACTGTTCTTCGGCTCCATCCTGGCCCCTGTACGCTCCCCCCAGGGCCCCAGC
CCTGTGCTGGCGGAAGACA
gtgagggtgaaggctgaaccaagaacctgaagcctgtacccagaggccttggactagacg
aagccccagccagtggcagaactgggtctctcagccctggggatcagaaaggtgggcttg
ctggagctgagctgtttcactgcctctcgcaggccccagctggctgtcactgtaaagctg

Exon 13 +       8170       8311   2   Internal    142    77        Good
gtctcgtccacactcatcatggcgccagcattgtcaaactcgccacagtagttgggagct
gagaaaagtgtcaccagctgccgcttggcaaagaactcgtagccgtcttctaccacctgg
gcgaggatgggagcagtcagtcccgagcgcaggcacggccctccccttcccctgccgcag
GCCGGAGCCACCAGCCCACCTGGTGTGCTCGGCAGATGAGGTCCAAGTCGTGCTTGTGGA
GGAACTTGGCCACCACCTCGGCTCCAAAGGTAAAAGAGACGCCACGGTCGTTCTCGCCCC
AGCCCTGCACGTCCTTGTCAGG
gtcagaccacagcaggtcacacagcaggccctggtcaggcacatctgtgggccgcatgat
ccgccgaatctgctccatagactgcaggtccggggacaggcctggggggccgggggaagg
tcacttcctcaaacaaggacatcctccctccaggaagccttggccaatgaaccccacctt

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