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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (6113 bp)
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PERCEVAL Exon Candidates (4 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       2838       2972   0   Internal    135   100   Excellent
tatggggtaacccagtgggagcgggcagggagggcccttggaaactgacagggctggagt
atcctgctgggtttcagccccggttcctgcaggcacagctgccaggctctctgttcacct
tcctgcctctggtttgccccggctccctcaccccccttaccctggagtccttccttctag
GTGGGAGATGCCATCCCAGCAGTGGAGGTGTTTGAAGGGGAGCCAGGGAACAAGGTGAAC
CTGGCAGAGCTGTTCAAGGGCAAGAAGGGTGTGCTGTTTGGAGTTCCTGGGGCCTTCACC
CCTGGATGTTCCAAG
gtgaggcccttccccttctgaagatcaggacctgggatcttttgtgttgctcttaagtcc
tccacatagtcctgataggactcctaaaaagcatttcagtgccatcacaaaacaagtaga
gctgggtagagctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaag

Exon  2 +       3765       3896   0   Internal    132   100   Excellent
ttaggtttcattctgagcttcctagtggccaaggcaaaaaggaaatagaatggtttagac
agctctcattgtctgatcaaaggtgttgaggcagagcactgaggagggcctggagataaa
gggtgggctgggggtcagatgcagttatccctttgccgaccctttgttccccttcctcag
ACACACCTGCCAGGGTTTGTGGAGCAGGCTGAGGCTCTGAAGGCCAAGGGAGTCCAGGTG
GTGGCCTGTCTGAGTGTTAATGATGCCTTTGTGACTGGCGAGTGGGGCCGAGCCCACAAG
GCGGAAGGCAAG
gtgaggtgaggggcctgcagggagtcaggaccaggtaggatattcttcttgtgaccttta
ctttctctgcaggttcggctcctggctgatcccactggggcctttgggaaggtgagtgtt
cccctgaccgccacagggacatggcagtgcggggagcagtgggggcccttagcctcttca

Exon  3 +       3969       4007   0   Internal     39    77        Good
caggctgaggctctgaaggccaagggagtccaggtggtggcctgtctgagtgttaatgat
gcctttgtgactggcgagtggggccgagcccacaaggcggaaggcaaggtgaggtgaggg
gcctgcagggagtcaggaccaggtaggatattcttcttgtgacctttactttctctgcag
GTTCGGCTCCTGGCTGATCCCACTGGGGCCTTTGGGAAG
gtgagtgttcccctgaccgccacagggacatggcagtgcggggagcagtgggggccctta
gcctcttcaaggatttctgacacttttctctgtctcttcttaggagacagacttattact
agatgattcgctggtgtccatctttgggaatcgacgtctcaagaggtaaaagtggagagt

Exon  4 +       4690       4795   2   Terminal    106    71        Good
ggggagagtcctctgtgtggagagagtcctgtgtggtggtgagtcctctgtgggggagag
tcctctgtggggggagtcctctctggagttctcttgggcccctggctgttcactgcctgt
ctccatgcccagcctccaagcccaggctgatgcagctggctgggcccctctttccggcag
GTTCTCCATGGTGGTACAGGATGGCATAGTGAAGGCCCTGAATGTGGAACCAGATGGCAC
AGGCCTCACCTGCAGCCTGGCACCCAATATCATCTCACAGCTCTGA
ggccctgggccagattacttcctccacccctccctatctcacctgcccagccctgtgctg
gggccctgcaattggaatgttggccagatttctgcaataaacacttgtggtttgcggcca
tctccttggttatgaatggctgtttcgctgagcgccaggcattctggcatcatcacagac

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