-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (13910 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (7 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 339 441 0 Initial 103 44 Marginal gtcagtggggcagaagggaggtgggggagggaatcaagttcacctttagacatgctacga tggaggtgcctatcaggcattcaagtgaagatgtcaaggagccacctagagattcaagtt tagagccccagggagcagagctgcagatgcagatttggaagtctttgctgtgtaaataca ATGCAAGGTGTGAGCCTGGATGAGATCTCAGAGAGCAGAAACTGGAGAGAAAAGAGAAGT CCCGAGGATGGAGTGGAGGAGGGGGACTCGAACAGCTGGCCTG gtgaaagacgagaggcacaaagggagcagccagagagctaggaagaaaactgggagagca tagtgtccaaaggccaagtggtttcaaagaaacgggaatgatcaaccatatctaatgctg ccaataggtcaggatgagatctgagaattgattactggatttaacatcatggaggtcact Exon 2 + 1270 1360 0 Initial 91 83 Good tgtaggatagaatttcctgcctcagcaggggcaaggaggccttggggctgggctgggctg ggctgggtgtggcactctccctgccagcttctacaacctggggagggaacaaaaacctgt gggtgcctcagaccacagcagagctcacagaacctgcgggagccaggctgacccgccagc ATGGTAGAGTTCGCGCCCTTGTTTATGCCGTGGGAGCGCAGGCTGCAGACACTTGCTGTC CTACAGTTTGTCTTCTCCTTCTTGGCACTGG gtaagttgggctgcactgtaagacgggagaccaccgcactcaggtggggcagagcagcca caccaggtgcacacagcacattgatggtggcaagacatttatcctaaagggggctttgtt gcgctcagagcccctgcccagagagaactcctgggcctgcccagaggcttcttgggggtg Exon 3 + 3373 3567 1 Internal 195 100 Excellent cctctcagggactttgtctcctctttgaatgccccggaagctgctgtcttcctcctgggc ccgaggattggacaggacagtgctgctagtgccaggcctatgggcagagttcagtctgag caatctcacctgccttcctctcagacccctgtccctgacagctccttcttccctccccag CCGAGATCTGCACTGTGGGCTTCATAGCCCTCCTGTTTACAAGATTCTGGCTCCTCACTG TCCTGTATGCGGCCTGGTGGTATCTGGACCGAGACAAGCCACGGCAGGGGGGCCGGCACA TCCAGGCCATCAGGTGCTGGACTATATGGAAGTACATGAAGGACTATTTCCCCATCTCGG TGAGTATTGAGGCTG gttggggttggggagggagttggctggggtgtggtcagggccagagtgccgacgtctcca tgggagaatatggccctgcatgcactgaggagggtactgggctgggaggcaggagctagg gcttccgctactatgtgacctagagaagagtccagcttctctccgatcatggtttcgcat Exon 4 + 6161 6264 1 Internal 104 58 Marginal aggcaggcctgcagaggaggctggggaggccctcaggtcagagggtggaggccattggag gacattccgcaggactgggactgctcacctgaaagttctcccggggtgtcttcagccagc ccaatggcctcaaaggacagcatctggccctctttgcacctggagcatttccatttgcag GTCTGGCAGAAATGCTGAGGCAGCTCTGCGCCTACCCTATCAACGTCCGTCCTTCCTGCT CCTTCCCCAGCCAGGTGGCTTTTGAGGAGGATATCTCAACCTTA gtactgttgacactggtgggacacaggcctcgatttgcagaaattctatgtgcatctttt tgtttctttgttttggttttgtttttgtttttttcgagacggagtttcacttttgttgcc cagtctggaatgcagtggcgtgatctcggctcactgcaacctccacctcccaggttcaag Exon 5 + 10816 11020 0 Internal 205 89 Good atatctccaggtgctgtcacataccatatctgaatcttcgtaagaacccagggtggtcag acatatggatgaagacctggaggctcagaggggaggtttcccaaggtcacaccagtgagt ggcagagtcagggctggtacacaggccccgccctggctcagcaggttgccgtccctgcag CTGGTCAAGACTGCTGAGCTGGACCCCTCTCGGAACTACATTGCGGGCTTCCACCCCCAT GGAGTCCTGGCAGTCGGAGCCTTTGCCAACCTGTGCACTGAGAGCACAGGCTTCTCTTCG ATCTTCCCCGGTATCCGCCCCCATCTGATGATGCTGACCTTGTGGTTCCGGGCCCCCTTC TTCAGAGATTACATCATGTCTGCAG gtgagtctttctacccctgagcagctcaggaaggtaacaaattttcggaagggttgccaa tagttctgtacttcttccaagagcgtgtgcagtaggagaaggaggctaggcccaaagaag cacttcctacagcaccatgctgggcgctgagtccatcagggggttgggaagagggagaag Exon 6 + 11351 11525 1 Internal 175 90 Excellent gtccatcagggggttgggaagagggagaagactcagggagctcctagctggaatggggtg cagtgggggaaaaaccccaggcctcagtaggcattgctggtgatctctttatgggctaca tgtactttcatagcccctgctccctcaccccatacctgacccacttttctctttccctag GGTTGGTCACATCAGAAAAGGAGAGTGCTGCTCACATTCTGAACAGGAAGGGTGGCGGAA ACTTGCTGGGCATCATTGTAGGGGGTGCCCAGGAGGCCCTGGATGCCAGGCCTGGATCCT TCACGCTGTTACTGCGGAACCGAAAGGGCTTCGTCAGGCTCGCCCTGACACACGG gtatcaagcctctgggaagagcactctgggttcagttggcaattggcaaggattttattt tggtgggaagatggcagagacgaatgcagattctattttggtagagattttcagtccatt cacaattaagattatattttggtgtcttatgcccaaatacctagaaaagtttccacaacg Exon 7 + 12171 12370 2 Internal 200 100 Excellent aaggtcagagaatggggctgtgaaggtctgggagataacccaggcctccacctccagccc aggtggctgacctctgctccatttcttggtcactgagtccctgcaggaagctaaagggcc tttcagctcgtgccttctctggggcctcccacatgccctctttcctctatttgtctccag GGCACCCCTGGTGCCAATCTTCTCCTTCGGGGAGAATGACCTATTTGACCAGATTCCCAA CTCTTCTGGCTCCTGGTTACGCTATATCCAGAATCGGTTGCAGAAGATCATGGGCATCTC CCTCCCACTCTTTCATGGCCGTGGTGTCTTCCAGTACAGCTTTGGTTTAATACCCTACCG CCGGCCCATCACCACTGTGG gtaagtccaggaccaggctgggagggaggaggccaaagggacagggcaggttgtgtgctg caaggggacatggagatgagccagatttattcctgccctaatggggctcacattctagac tgggaaacatacacacacaagcagatagaatagaagacagtctgggataggaactatagc --------------------------------------------------------------------------------