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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (11612 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1692       1911   0    Initial    220    77        Good
ctttctctctctcgcccacccttcccccttcttcccccacctttcccgcgaagccggagt
cagcatctccaggcgcgggatcccgctccgagcacctcgcagctgtccggctgccgcccc
ttccatgggcgccgcgctcgcctgcagccgccgccgccgcggggcgggcgcgatgccacg
ATGGGCCTAATCTGGCTGCTACTGCTCAGCCTGCTGGAGCCCGGCTGGCCCGCAGCGGGC
CCTGGGGCGCGGTTGCGGCGCGATGCGGGCGGCCGTGGCGGCGTCTACGAGCACCTTGGC
GGGGCGCCCCGGCGCCGCAAGCTCTACTGCGCCACGAAGTACCACCTCCAGCTGCACCCG
AGCGGCCGCGTCAACGGCAGCCTGGAGAACAGCGCCTACA
gtgagtgccggacgctgcggggccccgggggaagcggcgccgggaggggtcgggcccggg
agaaggcgcgctgcggggccccgcgggggaggcggcgccggggaggggtctggcccggga
gaaggcatggtgcgcccggggtgtccgggaaaagaccgtctgcctcccgctgccagaagg

Exon  2 +       4202       4305   1   Internal    104   100   Excellent
tctctacctcctgtccggtgacttctcccttcctgaacttccactcactccccgacctgt
ggggtgtgtgctaccctccccagccctgagcccggggtgtggctttgggcagggccagct
gggcctcagccgccccctccgtgggggcggcgggagtgaggcacctctcatttcttctag
GTATTTTGGAGATAACGGCAGTGGAGGTGGGCATTGTGGCCATCAGGGGTCTCTTCTCCG
GGCGGTACCTGGCCATGAACAAGAGGGGACGACTCTATGCTTCG
gtgagtccaggctgtcacgtgggtgggcgctgacggagtagcggtctggcctgcacatca
agccaggggacgggggatgtgggcagtagaatgctttgccaagggtacacgggacccaag
ctaggaccagaccctggcccagggctccacgcccagtgatctttggctgtgtctgttaga

Exon  3 +       9681      10076   0   Terminal    396    75        Good
ggaaggacatgctgggcagagggcagggcctaggcaaaggtgtgactggctgagagtgcg
ctggggtttggcactggaccgaacagcctcacaggaggggagggaggcatcaggcaaccc
tgggccctgacgctgccacagtctccccggggcactgaccatgatatctcatccccgcag
GAGCACTACAGCGCCGAGTGCGAGTTTGTGGAGCGGATCCACGAGCTGGGCTATAATACG
TATGCCTCCCGGCTGTACCGGACGGTGTCTAGTACGCCTGGGGCCCGCCGGCAGCCCAGC
GCCGAGAGACTGTGGTACGTGTCTGTGAACGGCAAGGGCCGGCCCCGCAGGGGCTTCAAG
ACCCGCCGCACACAGAAGTCCTCCCTGTTCCTGCCCCGCGTGCTGGACCACAGGGACCAC
GAGATGGTGCGGCAGCTACAGAGTGGGCTGCCCAGACCCCCTGGTAAGGGGGTCCAGCCC
CGACGGCGGCGGCAGAAGCAGAGCCCGGATAACCTGGAGCCCTCTCACGTTCAGGCTTCG
AGACTGGGCTCCCAGCTGGAGGCCAGTGCGCACTAG
ctgggcctggtggccaccgccagagctcctggcgacatcttggcgtggcagcctcttgac
tctgactctcctccttgagcccttgcccctgcgtcccgcgtctgggttctcagctatttc
cagagccagctcaaatcagggtccagtgggaactgaagagggcccaagtcggagctcgga

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