-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (13566 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (6 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 172 275 1 Terminal 104 89 Good actcagcacccttagagatgcaaagttccccaggctaacacagacctgagtgccctgcgc tactgctacctcgaatcatctgcggttcctcgaatcacacatgcggcgccccctggtggg gagacctttcggttgctcactgccctgagccgagctctgccctcctcctagGCTACCAGTTAGGGATCGGCAGGGACCACTTCCTGACTAAGGAGCTGCAGCGATACATCG AAGGGCTCAAGAAGCGCCGGAGCAAGAGGCTGTACGTGAATTAA aaacgccaccttgggctcgagcagcgacccgaaccagccccgtgccagcccggtccccag acccaagcctgaccccatccgagtggaatttgagtcctaaagaaataaaagagtcgatgc atggtccgtgagtcagtgcaggacagcccgcgtgaggcggacgcacgtggccccgccctt Exon 2 + 2809 3133 0 Initial 325 97 Excellent ggggcagtgttcctgggcagtccttccttggactctgccccccttcttccccacttgctg ggcttggaagcctggccctaggcccgaggttgggcaacccgtgtggcagggtgtctccca tcccccataccagtgctttcctgcgaacctatgggtctctccgtgcaggtgaccagcgcc ATGTCCAGCCAGGTGGTGGGCATTGAGCCTCTCTACATCAAGGCAGAGCCGGCCAGCCCT GACAGTCCAAAGGGTTCCTCGGAGACAGAGACCGAGCCTCCTGTGGCCCTGGCCCCTGGT CCAGCTCCCACTCGCTGCCTCCCAGGCCACAAGGAAGAGGAGGATGGGGAGGGGGCTGGG CCTGGCGAGCAGGGCGGTGGGAAGCTGGTGCTCAGCTCCCTGCCCAAGCGCCTCTGCCTG GTCTGTGGGGACGTGGCCTCCGGCTACCACTATGGTGTGGCATCCTGTGAGGCCTGCAAA GCCTTCTTCAAGAGGACCATCCAGG gtgagcccccagcccactcccctgtcctttgccctgcaccctctgggtacactgctgggt gcaataggccccctgatggctgtggcaccgcttgaggctaacaatctggtgtttccagtc cctctacctcccagagacactctttccctgagaagtatggtaaaagcaccgggtgtgctg Exon 3 + 9580 9696 1 Internal 117 100 Excellent ggcagggctcccccgcccagcagccactcccctccctgcctgctcatggccccctgctct ccctttcctccccatacccccagacctgtgcttgcccggggagagtcagggctctcctgt cagctgggtcccctcccagccccgggaggccgccactggagccctgcctcttcctggcag GGAGCATCGAGTACAGCTGTCCGGCCTCCAACGAGTGTGAGATCACCAAGCGGAGACGCA AGGCCTGCCAGGCCTGCCGCTTCACCAAGTGCCTGCGGGTGGGCATGCTCAAGGAGG gtgagcgctgggcaggggctgggcgagggctgggggagtcggggacccgggccaggtggg ggtgaggcctgggagttctggtgagtggactcggggaggacagctctggagagcaagccc caccctgcccacagcaccacagtcacagtcctatctgtcccacaattcaaggagtgcgcc Exon 4 + 10370 10540 1 Internal 171 100 Excellent cagcctgtccacaaacacacgggctttccctgggagacagttagcgctcttccctggagg gaagtcactggacagctgctactgaggaaggccacagggggagccactgtgggaagatgc ttgacccctgaggcctgacagattcgagtgctcctgactcttgtcctctaattgtcacag CAGCCCCAGTGAATGCACTGGTGTCTCATCTGCTGGTGGTTGAGCCTGAGAAGCTCTATG CCATGCCTGACCCCGCAGGCCCTGATGGGCACCTCCCAGCCGTGGCTACCCTCTGTGACC TCTTTGACCGAGAGATTGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAG gtaaagggcccaggtgacccggggctgccctgaacgggcccggctctggtgcgcttgctc agccaggcccgctccccgctgccccctaggcttctcatcgctgtcgctgtctgaccagat gtcagtactgcagagcgtgtggatggaggtgctggtgctgggtgtggcccagcgctcact Exon 5 + 10630 10899 1 Internal 270 100 Excellent cctgatgggcacctcccagccgtggctaccctctgtgacctctttgaccgagagattgtg gtcaccatcagctgggccaagagcatcccaggtaaagggcccaggtgacccggggctgcc ctgaacgggcccggctctggtgcgcttgctcagccaggcccgctccccgctgccccctag GCTTCTCATCGCTGTCGCTGTCTGACCAGATGTCAGTACTGCAGAGCGTGTGGATGGAGG TGCTGGTGCTGGGTGTGGCCCAGCGCTCACTGCCACTGCAGGATGAGCTGGCCTTCGCTG AGGACTTAGTCCTGGATGAAGAGGGGGCACGGGCAGCTGGCCTGGGGGAACTGGGGGCTG CCCTGCTGCAACTAGTGCGGCGGCTGCAGGCCCTGCGGCTGGAGCGAGAGGAGTATGTTC TACTAAAGGCCTTGGCCCTTGCCAATTCAG gtgagtctggggcaggcactgacaggtgaggtgtctccgtaaggtcttcaggttaactca gtgacggtagcacagccccattttgcagataacgaaaactgaggcttagggaagaacaat gacttgctagaagtcaaaaagcaagccaagtgcaggctccaaactgcacacaggattttg Exon 6 + 11336 11595 1 Terminal 260 94 Excellent gagggagagagggtggggtcctggcccacgagccgcagcaatgagtggtgcctctcagtc agccaatcaacaaatcctcgtttggctcttccttaggccccatccagcagtgctcaagat acggggagtgcccttgccagagatagcccaggccaacaccacattcctctcttcttgcag ACTCTGTGCACATCGAAGATGCCGAGGCTGTGGAGCAGCTGCGAGAAGCTCTGCACGAGG CCCTGCTGGAGTATGAAGCCGGCCGGGCTGGCCCCGGAGGGGGTGCTGAGCGGCGGCGGG CGGGCAGGCTGCTGCTCACGCTACCGCTCCTCCGCCAGACAGCGGGCAAAGTGCTGGCCC ATTTCTATGGGGTGAAGCTGGAGGGCAAGGTGCCCATGCACAAGCTGTTCTTGGAGATGC TCGAGGCCATGATGGACTGA ggcaaggggtgggactggtgggggttctggcaggacctgcctagcatggggtcagcccca agggctggggcggagctggggtctgggcagtgccacagcctgctggcagggccagggcaa tgccatcagcccctgggaacaggccccacgccctctcctccccctcctagggggtgtcag --------------------------------------------------------------------------------