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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (28383 bp)
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PERCEVAL Exon Candidates (5 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1456       1859   0    Initial    404    92   Excellent
ccgctccgcgaggggtgcgcagcattcggcagagggcgcttcgacgggctgggctgtgcg
cctgcgcagtgtgggtcgctcccgattccctgccccggccggccccgcctcggctccgca
ccctcgccccgctctcagccgccgctctgccccgcagcagccagccccgtgtccggcagt
ATGTTCAGCTGGGTCAGCAAGGATGCCCGCCGCAAGAAGGAGCCGGAGCTCTTCCAGACG
GTGGCTGAGGGGCTGCGGCAGCTGTACGCGCAGAAGCTGCTACCCCTGGAGGAGCACTAC
CGCTTCCACGAGTTCCACTCGCCCGCGCTGGAGGACGCTGACTTCGACAACAAGCCTATG
GTGCTCCTCGTGGGGCAGTACAGCACGGGCAAGACCACCTTCATCCGACACCTGATCGAG
CAGGACTTCCCGGGGATGCGCATCGGGCCCGAGCCCACCACCGACTCCTTCATCGCCGTC
ATGCACGGCCCCACTGAGGGCGTGGTGCCGGGCAACGCGCTCGTGGTGGACCCGCGGCGC
CCCTTCCGCAAGCTCAACGCGTTTGGCAACGCTTTCCTCAACAG
gtacccacccatcactccagggggcggggggcgcgtccggggcacacccctcactcggag
cctgaccctcccgtggctgtcgccccgccgtcctttgtctccgaggccccagtgagaccc
tcagtgaccactccctggtccaagggccctgccccttcccagagtaaacccactgggggt

Exon  2 +       5402       5499   2   Internal     98   100   Excellent
agtccatacgatttgccggccaccccgggaaactaagacgatagaaaaccacctgtcagt
tccccgctgctggagaggaagccagagatggagcgaaggagtacagagagccctttgttg
tgtccggagcagtgatgactgtgtcttgacgcctctcttctggctcttgctctcatgtag
GTTCATGTGTGCCCAGCTGCCCAACCCCGTCCTGGACAGCATCAGCATCATCGACACCCC
CGGGATCCTGTCTGGAGAGAAGCAGCGGATCAGCAGAG
gtaaacagctgtgaccacagctcgggctgctggtgttgtcacacatccttctctctaaga
tctgcaacttggttcagatgctgcccttgagatttctccttttttttttttttttttttg
acggagtcttactctgtcacccaggctggagtgcagtggcgcgatctcagctcactgcaa

Exon  3 +      19584      20008   1   Internal    425    95   Excellent
gtgatcctcccaccttggcctcccaaagtgttgggattacaggcgtgagccaccacgccc
ggcctataggaattttaaaaactatctcaggctgagaaataccaggccaggttggagatg
agagccatcagagcagcaggtcccttggcgcccctgagctctcccttctcttccccccag
GCTATGACTTTGCAGCCGTCCTGGAGTGGTTCGCGGAGCGTGTGGACCGCATCATCCTGC
TCTTCGACGCCCACAAGCTGGACATCTCCGATGAGTTCTCGGAAGTGATCAAGGCTCTGA
AGAACCATGAGGACAAGATCCGCGTGGTGCTGAACAAGGCAGACCAGATCGAGACGCAGC
AGCTGATGCGGGTGTACGGGGCCCTCATGTGGTCCCTGGGCAAGATCATCAACACCCCCG
AGGTGGTCAGGGTCTACATCGGCTCCTTCTGGTCCCACCCGCTCCTCATCCCCGACAACC
GCAAGCTCTTTGAGGCCGAGGAGCAGGACCTCTTCAAGGACATCCAGTCACTGCCCCGAA
ACGCCGCCCTCAGGAAGCTCAATGACCTGATCAAGCGGGCACGGCTGGCCAAGGTAGACC
CTGGG
gtgaggggagcagcctattgccaggcagggccatggggctctgagactggcactcagggc
cccaggattgcccgagacccttcccagctcacttcacaggcagacctgcactgcgctgtt
tccctctatagaaaccagtctttggtcagcacccgcgtgcagcctgctcttaactaagat

Exon  4 +      24434      24598   0   Internal    165    98   Excellent
tgtgtctgctcctaggactgtgggagccggtggtggtagcggccttgagcttgacccatc
cctcctgcttccctgttcctgagcgagcaccttggagtatccttggagtgtccttggagg
ctctgctctcgggggcagcctgggccaagagagcgcctgatgctcaccccgtcctcacag
GTTCACGCCTACATCATCAGCTCCCTCAAGAAAGAGATGCCCAATGTCTTTGGTAAAGAG
AGCAAAAAGAAAGAGCTGGTGAACAACCTCGGAGAGATCTACCAGAAGATTGAGCGCGAG
CACCAGATCTCCCCTGGGGACTTCCCGAGCCTCCGCAAGATGCAG
gtacggctgtcccgaggccccatgcaggctggtggccatcagggcagaaggaaggcccag
ggcactggatttggagggaatcccatctccatggggaagggcctccctgaacggaagcag
ctgggttaatcaccagcaccccacccaactcagagttgacccaggcggtgacactgcaga

Exon  5 +      25063      25587   0   Terminal    525    95   Excellent
gctggaggtgcctcctgtgtacaggttagagagccaagggccagatggttttgccgagtc
gcccctgctagtgtgggggagcagcactttatgcttgtgaagccctgactggaaccactt
ggcctggagtctgggaggggcctcccttcccagcccttgtccttcctcccccgcccacag
GAACTCCTGCAGACCCAGGACTTCAGCAAGTTCCAGGCGCTGAAGCCCAAGCTGCTGGAC
ACGGTGGATGACATGCTGGCCAACGACATCGCGCGGCTGATGGTGATGGTGCGGCAGGAG
GAGTCCCTGATGCCTTCCCAGGTGGTCAAGGGCGGCGCCTTTGACGGCACCATGAACGGG
CCGTTCGGGCACGGCTACGGCGAGGGGGCCGGCGAGGGCATCGACGACGTGGAGTGGGTG
GTGGGCAAGGACAAGCCCACCTACGACGAGATCTTCTACACGCTGTCCCCTGTCAACGGC
AAGATCACGGGCGCCAACGCCAAGAAGGAGATGGTGAAGTCCAAGCTCCCCAACACCGTG
CTAGGGAAGATCTGGAAGCTGGCCGACGTGGACAAGGACGGGCTGCTGGACGACGAGGAG
TTCGCGCTGGCCAACCACCTCATCAAGGTCAAGCTGGAGGGCCACGAGCTGCCTGCCGAC
CTGCCCCCGCACCTGGTGCCGCCCTCCAAGCGCAGACATGAGTGA
tggcgcccggccccgcacctgccatttgcacgcccggccgggaggcagagacggggggag
gggaagcctcaccatttctcaaggtccataaagactgagcggatgtttcctcgcctctcg
aaaaggaaaaccaccatctttcttttaaggctgttcctgggcctggcgggggaggcaggg

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