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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (53142 bp)
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PERCEVAL Exon Candidates (14 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1557       2058   0    Initial    502    73        Good
cgggcggactcggctcggctctgctcggcggctggctgccttttcggtccctattcgggc
ggcggcttcgggcggcctcggcccagctcgggcgtcctcttcgggccccgcttcgggctc
cgcgaccggcgcttcgggcggtcccggacggcgccttcgggaaggctcggcggagtccgg
ATGGAGGACTCGGACTCGGCGGCAAAGCAGCTGGGCCTGGCTGAGGCGGCGGCGGTGGCG
GCCGCGGCCGCTGTGGCGGCGGCGGCCGCGGCCGCGGCAGGAGGCGAGGCGGAGGAGCCG
GTGCTGAGCAGGGACGAGGACTCGGAGGAGGACGCAGACTCGGAGGCGGAGCGGGAGACG
CCGCGGGTCACGGCAGTGGCGGTGATGGCGGCGGAGCCCGGGCACATGGACATGGGCGCC
GAGGCCCTGCCCGGCCCCGACGAGGCCGCCGCTGCCGCAGCCTTCGCAGGCAAGTGCGCC
CGCCGGCCTCTCGCCTCGTCCGGTTCCCGCGCGCCTACCCCGCGCGCCTGCCCCGCACAA
CTGTCCCAGGTGACCAGCCCGCCACACCTGTCCCTCACACCTGCTCCACGTGACCAGCCC
GCTCCACCCGCCCTGCACACCTGCCCCTCACACCTGCTCCACGTGACCCGCCCGCCCCAC
CCGCCCTGCACACCTGCCCCAC
gtgactagctcacccctcacatctgcctctcacacctgccccacccgcccctcacacttt
ccccacgtacctgctccaggtgaccagcctgccccacctgccacaaatacctgcctcgca
cacctgctcgacgtttccagccttccccacctgccccacgtgatcggcctgccctacctg

Exon  2 +       5006       5103   1   Internal     98    95   Excellent
tgacttagacaatggaatagaaatgtaggtcgagcgtgttcatggaagtgttaagatctt
cctggttacaagggcacacacctgagggggagtcactttgtttgaagcacctgagcgagg
ctgttcgctttgtccattctggcttttgttgcttgttaaatgaggctccttctgttgcag
AGGTGACCACAGTGACAGTGGCCAACGTGGGGGCTGCTGCAGACAATGTCTTCACCACGT
CTGTGGCGAACGCGGCATCCATCTCAGGACATGTTCTG
gtaagctgctccgaggggcacagcccagggcgggtggtgccacgctgggggcctccggct
tccccgaggctctcccggggttcagcccgctgtgtgaacgtctgctctgtgagctgggga
gggacgcactggctcgctctgctctcagaggccttcgggctgtgctggaggtgggagaaa

Exon  3 +       8144       8281   0   Internal    138    77        Good
cttggctctgttttcaagtctttgagaggtatctttggaaaagatatggggtgcctaggt
gagcgtcccttcttggtgagaacagccagagagccctgctggaggacggcccagctgggc
tcagtgacacgcctggtgtcactctcggacgtgacctgacggagcggtttttccttctag
TCTGGTAGGACGGCCCTTCAGATCGGGGACAGCCTGAACACCGAAAAAGCGACACTGATT
GTCGTCCACACAGATGGGAGCATCGTGGAGACCACCGGGCTGAAAGGCCCGGCAGCTCCC
CTCACCCCAGGTACAGCG
gtgcctgcaccccaggcctcgggcaaaacacgtttcagaatagctagaatttatttcagg
gatttatttacttgtttctttttgtggtaaatttggaatatcatctattaatagatttta
agtaaaagcattggaattttcctgaccaagaagtttttccgccgttgaaggaggtggcgc

Exon  4 +       8555       8693   0   Internal    139    90   Excellent
tggaatatcatctattaatagattttaagtaaaagcattggaattttcctgaccaagaag
tttttccgccgttgaaggaggtggcgctgccggggaggtggtgtctgagatgagagtgta
ctatgcttcccggtgtccggcctctcaccttcaaacactttctctgcccaaggtcctcag
TCTCCTCCAACCCCTCTGGCTCCCGGCCAAGAAAAAGGTGGAACTAAATACAACTGGGAC
CCTTCTGTGTACGACAGTGAGCTGCCCGTACGGTGCCGGAACATCAGCGGCACTCTGTAC
AAGAACAGGCTCGGCTCAG
gtgaggactgccacttcagactccaaagttgtattcccctttgtaacccccctagcataa
attgggggctgagaaagatgaaaatcatggcacctagaactagttaagaagacagggctg
ggcgcggtggctgatgcctgtaataccagcactttgggaagccgaggcgggtggatcaga

Exon  5 +       9607       9789   1   Internal    183    77        Good
acaggctgcaaaggcagacccgtggtggacctgtcagggccaagtatgtgggtgggtgag
atcacatgagccgctggggcgctggtgctggtggaggggttgaggaggcgccaggaggta
ggcaatggcagaggtgacgttcccacctgccatcatcatgactgctgcccttccttgcag
GCGGCCGGGGACGGTGCATCAAGCAGGGGGAGAACTGGTACAGTCCCACCGAGTTTGAGG
CCATGGCAGGAAGAGCCAGCAGTAAGGACTGGAAAAGAAGCATTCGCTACGCGGGCCGAC
CCTTGCAGTGCCTCATCCAGGTATCGTCCGTGACCTCACCTGTGCTCAGCACACAGTTCA
GAC
gtggggccctctgaggcggcccagccagagggagggcacagaccacggggtcagacaaat
ggggtttgcagcctccacctgctgtctgtgtggccttgggcgagtgatttaccctctcat
gtttcagtttccgggtctttcacgtggggatgacgatgatcgtgaccctgtgaggattgt

Exon  6 +      13625      13896   1   Internal    272    70        Good
actctccagagaaataactagtgaaaattgtgaaaaaataaccccttaaggtctccagaa
attgtcctaggggagtacagcaaataaacatccaagaaaatgtagtaagtcttggaaagg
gcagtgaggattgtgacgtttgagctacgaccagctccttccctccctttctgcccccag
CTCCCTATGGTGGAGGCTCCATTGTGGGTGGTTGTGACCAAGAAAACGGTTCCCACTCCT
TGCAGTTCCCGGTCAAGGGATATGGTATCTCACTGGGAGGGGCAGGCCACCAGCATTTCT
CAACCCCTTCAGCTCTAAGTTGCAGTAAATTCCTGGGAAGTGTGACTGAAAATCTCTTCA
GTCATCCCCACTCAGAGGGCAGAGGCTTTACCCAGGCATGGGAGGCCAAGCATACGGAGC
CCCAATTTCCATCAACCCACATTGCCCATAGG
gtggggtgtccatgcagtgagaggctgctgccccccacacagaacccggctaatgcaaca
gaattccctctgatagactcaggcactgttcctgcctctaggtctatagtaggggctcag
acattcagcccaaaagagagagaggccgtaagaacagagagctccaaagcccctcccaaa

Exon  7 +      15515      15641   0   Internal    127    89        Good
agagtgaaactccgtctcaaaaaagaaaaagaggtgggatctttaggggcgcttaccatc
ttaatgtggtctcaccatgtgactcacacaccccgcggtgcccccacttaaggaggagtt
gcaagcgcagcatagcttttgcacacatgaaggtggtggcctctctcctttctcccccag
AGTGGCCCAGTCAGGCTTTTTGTGCCTTACAAAAGGCGCAAGAAGGAGAATGAACTGCCC
ACAACTCCCGTGAAGAAGGACTCCCCCAAGAACATCACATTGCTTCCAGCCACCGCGGCT
ACCACCT
gtgagtttgagaaaacacagctctagtttactgaggggacctgagtgcattgccttctct
cgtcaccactcccacggccactgcgggattctcacttctaaagcacattgcgtggccaga
gggattccaacgccatcacactcctttgcagtgcgtcccccgggtgggaaggggtgtccc

Exon  8 +      16788      16916   1   Internal    129    97   Excellent
ctgtgaggtcttctccaaggtctgggatttcccccgtgtccttcacatgggagggtacag
ttaccactgcccgcccttcagcccaggcccccacaaggattggcgcccgtgggtggcacg
ggacctgtgtgccgtgggcgccactgcctggccgcgtgaaatgtgcttctgcctttccag
TCACCGTGACCCCCTCGGGACAGATCACGACCTCGGGGGCACTGACCTTTGACCGAGCGT
CCACGGTAGAGGCCACTGCTGTCATATCAGAGAGTCCGGCCCAGGGCGACGTCTTCGCAG
GGGCCACAG
gtgagctgctccagtgcctgcctgacgcgtcctcagcatatccctgtctgtgacatcaca
tccccgacgccacattgggctgcataggctgctgggtgcctcgagaggggccttgaacca
ggcgtttgttggtggggacagcgtgtgagccacgtcaggtgggcggtgcagtgtggatgg

Exon  9 +      21348      21595   1   Internal    248    92   Excellent
tcactgttagccaggatggtctcgatctcctgacctcatgatccgcctgccttggcctcc
caaagtgctgggattacaggcgtgagccaccgcgcccggctgagaatttttaacggaggc
cattttgaagctaggagatgtattaatttcttggtttgttttgctttccaaatgctctag
TGTTGACATCCCTGCCTGCGCTGGCGGTCCCACCCCCGACTCCCACCAAAACGGCACCTC
CCGCGTTGGTCAATGGGCTGGAGCTGTCAGAGCCGCGGAGCTGGCTGTACCTAGAAGAGA
TGGTCAACTCCTTGCTCAACACAGCGCAGCAGCTGAAGACGCTGTTTGAGCAAGCCAAGC
ATGCCAGCACCTACCGAGAAGCTGCCACAAACCAGGCCAAGATCCACGCTGACGCAGAGC
GGAAGGAG
gtaaccttggaacaaatgggaagacacgacctgtgctgagtaaccccaggccaccctggt
gcctgtgcccagctgcgtaagacccaccttggctcacaaggcccctgccccacctttctg
gaaaagggagctgtggagagtcatttacaaatgaagcttttcctaaagaaaagtgacagc

Exon 10 +      33404      33588   0    Initial    185    57    Marginal
cagcctcccagagtgctgggactctaggcgtgagcccctgcttctggcccccaggccagt
agtaaaaagccaaatatcatccctttcagagcatcaggacagcggttgtgctcagggagg
ctgggaatgggcatcgtgccctctgggggtgcggcagggtcagttggctggaggatattc
ATGGTGCTGCTGCCCCCTGCTGCCGTGCTGAGGGCTGACATGGTGAACAGTCATGGGCAC
TTGCAGACGTGGTTGTGCCCAGTGCTGTGTGCATGCAGCCGTTCCAGCAAAGGTGGTGGT
CACTTGGACCATTGTGGTGCCATCATGGTACAGCACCCAGGCAGGAGCAAGGCCGTTGTG
TTCTG
gtgagatgatggttctgaattagatgtggagatttctttgagatcagctccacaggtatc
ttacgagggctcgggggtgaggctcagaagtcctacaaggaggggcctcaacctgtgtcc
cttcacctgcagcaacagcaacgcggagcaacctccaggagcctggggggcgcctgggct

Exon 11 +      36835      36868   0   Internal     34    53    Marginal
cctccaatcacctggcccctgaagcaggcggaggcccctgtgcacagtgggcctgtggcc
ccatttggttcaggagtgatggtgacacggagttggctccatcgaggctcctggcagcat
tacatcctctaagaataagtcataaagaaagcactccttgtaagatacacgatccaccag
GCTGCCTCCAACCACAGCCTCATCTCCATCCGGG
gtgtgtctaggttttcttttttattattattttttatcatttgagacatgttctccctct
gtcacccaggctggagtgcactggtgtgacctcagctcactgcaacctccacctcccagg
ctcaagcaatcctcccacctcagcctctctggtagctaagaggtgcataccaccatgccc

Exon 12 +      40586      40780   0     Single    195    40        Poor
ttgcgccactacactccagcctgggcgacagagtgagactccatctcaaaaaaataataa
taaataaataaagtagaggcagggggcaacctaaattagcaccaaaattcctcctaatgc
tcctgttttctgaagtgagtgactgaatgtcggagctctgaatgtcttacaactggaaaa
ATGTTAAAGATCACGTTTGCGAAGGAGGGAGGCAAGCATCAGAACAGAACCTCGGAGCAG
GTCTGCACGCGTGCAGGGGCCGTGGGGCCGCGCTGGAGTCGTTTCCTGTGCTGCTCTGTG
CTGCTCACAGACGCTGCCACTCACCCACTGGCCACGGCCCCTCCCGCAGCGCCTGCGGAT
GATCTGGGCGCATAG
cgggcgtgcaggtcgcggcgccaaggcctctcctaggcccagtggtcttctccgtctcag
agagcattgacggcggagctcacaactgtcaagcaccttagtcatgccgcaaacattaat
cattgacagcatgttgacctatgcgctgattaaaaagaaaagctccaataatgtaattcc

Exon 13 +      42199      42338   1   Internal    140    79        Good
caggagaattgcttgaacccaggaggcggaagttgcagtgagctgagatcgcgccacggc
actccagcctgggcgacagagtgagactccatctcaaaaaaaaaaaaaaaaaaaaagggg
gtccaatggggggaacttggggcctcctgcctgcacctgcctctgtccccggtgtctcag
GGGCTCTCCATGGCCACGTCACTGACTGGCCTGTTGTGTCCTTCTTGCAGCAGTCCTGCG
TTAACTGCGGCCGGGAGGCTATGAGCGAGTGCACCGGCTGCCACAAGGTCAACTACTGCT
CCACCTTCTGCCAACGCAAG
gtaggtctcacctacaccaggctcagtgcccccgcctcctccctcgctacgaagacccct
gggtggccctccctccccttgtgctcctggtgccacacctgactcccctccctgtccctc
cctctgggaatccggggctcctgcctggctccgtgaagaccctgcagaaggctcacatgt

Exon 14 +      51522      51626   0   Terminal    105    93   Excellent
gaaggctgtattggagcagagcccaccagagtttgggcgcacgggggctggggagggcat
tctcagcacctccaggtgaggttacagagggctgcaccctctggggtctgccttggggac
cctgcccagaccctgctccacccactgaccctgctgacatgggtgtgtcctcccttccag
GACTGGAAGGATCACCAGCACATATGCGGCCAGTCAGCAGCTGTCACCGTCCAGGCAGAC
GAAGTCCACGTGGCTGAAAGCGTGATGGAGAAGGTGACCGTGTGA
ggctccatcggccgccctgggagctggggcccctcgcactcctgtgaggcttttgcaggt
cgaaggcccccctgaggactctggggggacgttgagaagaggggtgtgggaaggtaaaga
aacttgctggacaagtcattaacacactttaagcgaatggtgccctgggaagcgcactcc

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