-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (15768 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (7 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 1410 1607 0 Initial 198 96 Excellent gttgcaaagtcctggagcctccagagggctgtcggcgcagtagcagcgagcagcagagtc cgcacgctccggcgaggggcagaagagcgcgagggagcgcggggcagcagaagcgagagc cgagcgcggacccagccaggacccacagccctccccagctgcccaggaagagccccagcc ATGGAACACCAGCTCCTGTGCTGCGAAGTGGAAACCATCCGCCGCGCGTACCCCGATGCC AACCTCCTCAACGACCGGGTGCTGCGGGCCATGCTGAAGGCGGAGGAGACCTGCGCGCCC TCGGTGTCCTACTTCAAATGTGTGCAGAAGGAGGTCCTGCCGTCCATGCGGAAGATCGTC GCCACCTGGATGCTGGAG gtgcggggcttcgggcggctctcttaagacttccctgcaacttgttgcccagacccacgt ttctttgctactcacccccctcccttctctcccgctagaactttgaagtttgccgtggtg tttctagggatccgtattttcaaaataaaaattgcgggtattttctgaaggaggaagggg Exon 2 + 3127 3342 0 Internal 216 80 Good gtgggtactggggacgcgcgggggagggggcgcatcacgggaagctcctgccgcccccag ccccgacccctcggcgccctccagacctggcggccctgccaagcgcgatggggggtgcgg gggcgtgcgggggggcggcgcgacctggcggcggcggtcacgggccccgtgcctccgtag GTCTGCGAGGAACAGAAGTGCGAGGAGGAGGTCTTCCCGCTGGCCATGAACTACCTGGAC CGCTTCCTGTCGCTGGAGCCCGTGAAAAAGAGCCGCCTGCAGCTGCTGGGGGCCACTTGC ATGTTCGTGGCCTCTAAGATGAAGGAGACCATCCCCCTGACGGCCGAGAAGCTGTGCATC TACACCGACAACTCCATCCGGCCCGAGGAGCTGCTG gtaaccactggaccccgccgccccccgccccccgcgagccgcacgcaggaccacggggcc ggggaaggtgcaggcggtggcggccggcccgcctctgacatatctgctcctccgagggag ggcggccccgccgccgggcgtccctgtccggggagcgggcgggatcctagccgccctcgt Exon 3 + 3928 4068 0 Internal 141 100 Excellent gctcccttgagtccccagcattcgccagccctcccctccaacatccaggaccgcacgaga cgcaggggccagtgctctgagccggaggtgcggcgtggcccggcccccgtgctgccggct tccccgcgcccccgggctggcccgcacctcccctgatggccgctcaccctgtgttcgcag CAAATGGAGCTGCTCCTGGTGAACAAGCTCAAGTGGAACCTGGCCGCAATGACCCCGCAC GATTTCATTGAACACTTCCTCTCCAAAATGCCAGAGGCGGAGGAGAACAAACAGATCATC CGCAAACACGCGCAGACCTTC gttgccctctgtgccacaggtagggcaggcccggcagcccccggcctccccttgagagcc ggctccttaggtgaccctggccggcttcttgctctccacctgggtgctgtctgggaagat gtccccagaccccctcctgcgctggagagcgctcttccagctctggtgagcagaggccct Exon 4 + 4139 4233 0 Internal 95 91 Excellent agtggaacctggccgcaatgaccccgcacgatttcattgaacacttcctctccaaaatgc cagaggcggaggagaacaaacagatcatccgcaaacacgcgcagaccttcgttgccctct gtgccacaggtagggcaggcccggcagcccccggcctccccttgagagccggctccttag GTGACCCTGGCCGGCTTCTTGCTCTCCACCTGGGTGCTGTCTGGGAAGATGTCCCCAGAC CCCCTCCTGCGCTGGAGAGCGCTCTTCCAGCTCTG gtgagcagaggccctggattgtttgtcgcgctggatggagggagatttgctccctcacgg ccaccatgcagtaccttgggcattggtgtggacggctcagcctgcctgtgtcccgttact ctggcctcgtccttcaggccaggcagcctgtggccactccatgctgaaaggggtttacct Exon 5 + 8090 8238 1 Internal 149 100 Excellent tccgagtgcccagggatggctggaggctgaggagggcctggatgtggagcctcagatacc gagtgcttcccttcaggccgggccgcttgctcagagccagcacacagggatgcccggatc acgggggccctgagagggtcccctgctcacagcctccttccctctctccttctgcctcag ATGTGAAGTTCATTTCCAATCCGCCCTCCATGGTGGCAGCGGGGAGCGTGGTGGCCGCAG TGCAAGGCCTGAACCTGAGGAGCCCCAACAACTTCCTGTCCTACTACCGCCTCACACGCT TCCTCTCCAGAGTGATCAAGTGTGACCCG gtaagtgagggtgatgtcccaggcagccttgccggggcttacagggggagacacctagtg ccacggaaatgccgaggctggtgccaaggcccccaagggtgacaaggttggggctggggc tgggcccctcggaccccaggccacagactgacagggcaccggcttcttccactgctccta Exon 6 + 11214 11366 0 Internal 153 94 Excellent tgatggcagctcccacatctcgctcaggttcagaggaggcagcatgggccgagggacagt ttttggcttagtcttgctcttataaaggcttccgggtcatggcacctgggaaggggccct cgctgcaggccccttctaaggaccccctcttcccacctctccccaccctctctctctcag GACTGCCTCCGGGCCTGCCAGGAGCAGATCGAAGCCCTGCTGGAGTCAAGCCTGCGCCAG GCCCAGCAGAACATGGACCCCAAGGCCGCCGAGGAGGAGGAAGAGGAGGAGGAGGAGGTG GACCTGGCTTGCACACCCACCGACGTGCGGGAC gtggacatctgagggcgccaggcaggcgggcgccaccgccacccgcagcgagggcggagc cggccccaggtgctcccctgacagtccctcctctccggagcattttgataccagaaggga aagcttcattctccttgttgttggttgttttttcctttgctctttcccccttccatctct Exon 7 + 13198 13238 0 Internal 41 96 Excellent ctgtttggcgtttcccagagtcatctgattggacaggcatgggtgcaaggaaaattaggg tactcaacctaagttcggttccgatgaattcttatcccctgccccttcctttaaaaaact tagtgacaaaatagacaatttgcacatcttggctatgtaattcttgtaatttttatttag GAAGTGTTGAAGGGAGGTGGCAAGAGTGTGGAGGCTGACGT gtgagggaggacaggcgggaggaggtgtgaggaggaggctcccgaggggaaggggcggtg cccacaccggggacaggccgcagctccattttcttattgcgctgctaccgttgacttcca ggcacggtttggaaatattcacatcgcttctgtgtatctctttcacattgtttgctgcta --------------------------------------------------------------------------------