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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (27247 bp)
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PERCEVAL Exon Candidates (17 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1201       2166   0     Single    966    85        Good
gccgggtgcacgctcgccgccctgggaggagtctccctcccttggctctcctttctggga
actgccggctgtcccgtagcgttggcggttccagagtgcgggctgcacggagaccgcggc
agcggccggagagcccggcccagccccttcccacagcgcggcggtgcgctgcccggcgcc
ATGCTTCTGCTGGGCATCCTAACCCTGGCTTTCGCCGGGCGAACCGCTGGAGGCTCTGAG
CCAGAGCGGGAGGTAGTCGTTCCCATCCGACTGGACCCGGACATTAACGGCCGCCGCTAC
TACTGGCGGGGTCCCGAGGACTCCGGGGATCAGGGACTCATTTTTCAGATCACAGCATTT
CAGGAGGACTTTTACCTACACCTGACGCCGGATGCTCAGTTCTTGGCTCCCGCCTTCTCC
ACTGAGCATCTGGGCGTCCCCCTCCAGGGGCTCACCGGGGGCTCTTCAGACCTGCGACGC
TGCTTCTATTCTGGGGACGTGAACGCCGAGCCGGACTCGTTCGCTGCTGTGAGCCTGTGC
GGGGGGCTCCGCGGAGCCTTTGGCTACCGAGGCGCCGAGTATGTCATTAGCCCGCTGCCC
AATGCTAGCGCGCCGGCGGCGCAGCGCAACAGCCAGGGCGCACACCTTCTCCAGCGCCGG
GGTGTTCCGGGCGGGCCTTCCGGAGACCCCACCTCTCGCTGCGGGGTGGCCTCGGGCTGG
AACCCCGCCATCCTACGGGCCCTGGACCCTTACAAGCCGCGGCGGGCGGGCTTCGGGGAG
AGTCGTAGCCGGCGCAGGTCTGGGCGCGCCAAGCGTTTCGTGTCTATCCCGCGGTACGTG
GAGACGCTGGTGGTCGCGGACGAGTCAATGGTCAAGTTCCACGGCGCGGACCTGGAACAT
TATCTGCTGACGCTGCTGGCAACGGCGGCGCGACTCTACCGCCATCCCAGCATCCTCAAC
CCCATCAACATCGTTGTGGTCAAGGTGCTGCTTCTTAGAGATCGTGACTCCGGGCCCAAG
GTCACCGGCAATGCGGCCCTGACGCTGCGCAACTTCTGTGCCTGGCAGAAGAAGCTGAAC
AAAGTGAGTGACAAGCACCCCGAGTACTGGGACACTGCCATCCTCTTCACCAGGCAGGTG
AGTTGA
tctgccgtcactttgcacccagatagtcccgttctttagggtcacctcccctagcgctcc
aaatcccctttgtatcgtgcaatgcctccgagtttaaacctcgttgatctcttccgactc
caactctgtggagtttccagggagagccctctcccacgctccgcggagcggcggctcacg

Exon  2 +       3998       4159   0    Initial    162    66    Marginal
ggccaagaacaggatatcttaatgggcaaagcagctgttgccccattcgttacctgggct
gccccagtgcaggtcactcactggctccaaaataaaagacctcagcctctgcagcctggt
ggtgaaggctggcttctggagtcagccctaggagaagaactcctgctgggaatagggacc
ATGCCGTCAGAAGGAGGCCGCCTTTTGAAGAAGAAGCAATCAAACAGCATGACAGCTTCT
ATTTCTCAGTGGTGTGTGCTCAACCCCCCGGGGGCTGTGTTGTCCATGCATAATGGGTAC
AAGATGCATGACCACTGGATCAGAAGCAGTGATGTGCAAAAT
gtgacttttagaagctgccttccccttaggtgcctagagagcaaagctagagagtgaggc
ttctgtgtggtcagggccaccatcaaggtatgtactttatgcttcagaggaaacccctct
tccccacctcctcagcagctcagacttcagggcctactgcattctgagagtctcaggatc

Exon  3 +       8135       8238   2   Internal    104    74        Good
caccttggagtcagcagacaaggtgcatggcagggcagggacggggtcagtgtgtcaatg
caggtgtggggcaaggagccgggggctcgttcaaccggagaggtggcgcagacggtgcac
tcagagcactctcggcacttaatcctgcctctccctctccccaggcctctccccactcag
TGTCAACCGGCACTTGCTTGAGCTACAGGGCGAGGCCTTCCATTCTTGGGGCGATATGCA
CCAGAGGCAGCAGGAAGTCATGGTGACAGCTCAACCCTGCCGCT
gtgctgcctggacttcaatcctcactctgcgcccttcctctctgtctaaccttgggctta
ctgtgtgaccctgggctagttacttaccttctctgggtctcttctgtgcgatggggcctg
ataatggcatcttcttcctacagctgtgaggattaaatgaatgaaggcagataaaactct

Exon  4 +      10225      10322   1   Terminal     98    66    Marginal
cagcggttcttcattgagtccctgccggggtggggaggaggacaggcagagcttctgacc
ccatacagctgtgtcttcccacagtgaagacgctggttactgcaagacggctgcttccag
agccactcttaccctcaggaaatttgccggctctttccttgttcctctcatttgatccag
GGAAACCGGGACTTCTTGATGGAAAGAACAGGTTGCTTCTGGCCAAGAAGGGCCTGCAGC
TGCATGTCTTTGCTCCAGAGAAAATCCACCCTCCCTAG
gaggaaggaggcttttggccgtaaggacttcccagccacagaggcggctgcggggtggct
gagttccagacgccctctagatcccagtctgagcattcaatctggtctagcggtttcttt
ctttcttttttaaattttaatttttgtagagatggggtcttgttacgctgcccaggctgg

Exon  5 +      11060      11231   0    Initial    172    76        Good
agagagaggacttggataaagtcacacatctacttagtgatagggccaggaccggaatct
agacttcttgattcttatttctgcgccctctccctcttacacagggagcagtgagtgtgc
agggcagcccagaggcaagggtaggtgcctgcccccgcaggctgcaactgctaggctaga
ATGTCCAGAGCTCCAGCCTTGCTGGGTCCTACACCACACCCGTCCTACACCTACATCCTT
CACTATGCCCTTGCAAGAGCCTTCATCCCTGCCCTCATCTTGGCTCCCTTCCCCACAGTT
CACACGCTGATCCATGTTTCTCAGCTGTCACATTCCCTAAACTGCTGGTCGG
gtgaaggtcccctcccaagtgttttttttttttttttttttttttttgagacagagtctt
gctctgtcacccaggctggaatgcagtggcgtgatcacgggtcactgtagattaccctcc
caggctcaagtgatcctcctacctcagcctcctcctaccagcctggccaacatggcgaaa

Exon  6 +      13716      13848   0   Internal    133   100   Excellent
gattctgtgaacagccccacaacctcctaggaagaagagcccagctggaaggtgctgggc
ctggtgaggttggaatgagatgagctggaatgtcctataggatgtcctttcttcccttca
ggtcccttctgtcactgtctctaacttcgggctggcttctgcttctcccccacccggcag
GACCTGTGTGGAGCCACCACCTGTGACACCCTGGGCATGGCTGATGTGGGTACCATGTGT
GACCCCAAGAGAAGCTGCTCTGTCATTGAGGACGATGGGCTTCCATCAGCCTTCACCACT
GCCCACGAGCTGG
gtaaggctggataagctcctcctggggtcttctgggtttgcctggggagcctggagggtg
ggagacgtgtgtctttgcccccttgtgttctgaagccttaggaccccttcttagggcaca
gtgagccttagcagcagctttgtactttttccgattgccccagccccgctggccaatgac

Exon  7 +      14314      14481   1   Internal    168    97   Excellent
ggaggggacagaaaacacaagaacatgatcttgaggacatttgaaagcagtctgtcgata
gttggcaatgaccagcctgaaaacctctgacatgggctttctagttcccctgccccattc
ctccctccaacccccatgtccttcctcctgccctctcagtcctcttgccttaccccacag
GCCACGTGTTCAACATGCCCCATGACAATGTGAAAGTCTGTGAGGAGGTGTTTGGGAAGC
TCCGAGCCAACCACATGATGTCCCCGACCCTCATCCAGATCGACCGTGCCAACCCCTGGT
CAGCCTGCAGTGCTGCCATCATCACCGACTTCCTGGACAGCGGGCACG
gtaagccaggacggcgggagggcaatgaggccgcctcggagggggctttgctgctgcccc
tggtggaggtgctcacttctccgtcctctgtacattaggtgtgtgtgccccctcggagcc
gggctctgacatgagtgcattcctgttgcccttggttcattatccccttaccattcagat

Exon  8 +      14724      15011   1   Internal    288    93   Excellent
gtggaggtgctcacttctccgtcctctgtacattaggtgtgtgtgccccctcggagccgg
gctctgacatgagtgcattcctgttgcccttggttcattatccccttaccattcagattc
tgggctagccaaacctcatcttcccagctcatcctaacgaacgccctcggctctctgcag
GTGACTGCCTCCTGGACCAACCCAGCAAGCCCATCTCCCTGCCCGAGGATCTGCCGGGCG
CCAGCTACACCCTGAGCCAGCAGTGCGAGCTGGCTTTTGGCGTGGGCTCCAAGCCCTGTC
CTTACATGCAGTACTGCACCAAGCTGTGGTGCACCGGGAAGGCCAAGGGACAGATGGTGT
GCCAGACCCGCCACTTCCCCTGGGCCGATGGCACCAGCTGTGGCGAGGGCAAGCTCTGCC
TCAAAGGGGCCTGCGTGGAGAGACACAACCTCAACAAGCACAGGGTGA
gtgagtgctggagctgcgctcggggactgctgggaggagggatggagacccgggggcctc
gtctgcccttggtcttcaccaggaaggtgcctatcacagactggccacgggaccagcact
gttgcatggctgagctgtgccttcactgccctgtatatagtcctatccccttcttgactc

Exon  9 +      16398      16450   0    Initial     53    92   Excellent
aggatccctgtaggcagaaacagagcaaggcaaggaggcgggcggtcctgggcaggtcgg
agtgagctgcagggctgtgtagatgagggctctatgggaaccatcttcaggaaggtcatt
tggggccagacagcagccaccttgattgccaggcactagaaggtcctgaggacaggcaat
ATGTGGCCAGTGCCTCGTCCTGAGAAGATGAGGCTGGAGGATGCAGAGACAAG
gtgagataatattggatagagaaaatgcagtctgagaagcaccatctttccacactttct
ggaattctgtctatgatcaggcaagatctacctcctcaacctcttttctaaacaatccct
tggccaccttgttttaactgaaactttccaggaaaccttcatggaagtcattgccctcac

Exon 10 +      16602      16637   0   Terminal     36    56    Marginal
aagatgaggctggaggatgcagagacaaggtgagataatattggatagagaaaatgcagt
ctgagaagcaccatctttccacactttctggaattctgtctatgatcaggcaagatctac
ctcctcaacctcttttctaaacaatcccttggccaccttgttttaactgaaactttccag
GAAACCTTCATGGAAGTCATTGCCCTCACTGGCTGA
ggtcagatcataaagcatgtcttacaaatcactgcagctcccacagatctgtttcaggaa
tcccattctgaccaccaaggccctgtcttcccagattactccctctgggttttggattcc
aacaattcctcaatcccatctgggcctacaatctattgctacaacaaccttcccatcatg

Exon 11 +      17756      17904   1   Internal    149    79        Good
cctctcgcttgttagggacatcgctgatcaattctctctctcctgcagtgccagtatttc
ccaatcttgagctgaatcatgccttttagaatacaaacctgttgtaatttctcccatctg
aaacaaaacttcttatgatcccacttcctctgtggtctgtttctctgactcccttcacag
CAGGTTCCCGGAAGGAGTTGTACAAGCTTGCTGTCTCCAATTCCATCTTCCCACTTTTCT
CTGCTGCCCATTCCAAACAGGCTTTGACTGACATCATTTCTCCAAAACAACTCTTATTAA
GGCTACCAAATGGCCTGCACACTACGAAG
gtcagtgactgttacctttcctcccatcgtccagccggctagcagcatttctggcaaccc
agagctctgggccctggaacagggtctccactgcctctcggttgtcctcctcctcctcac
gctgcccctccccttctcattacctttactgcttcttccttgtactctcattttcttttt

Exon 12 +      21489      21617   0   Internal    129    56    Marginal
ggtgggcttggtgtgcactggccatttgtttattgttttttccttcatgatacaacatta
atttcattccaggaaggtgggatgagaacttggaggctgtacagtgtagttttctatggg
ctgaggggctgggtgtggcacctggatccaccaaggaatataacaggctcttcctcacag
GTGGATGGTTCCTGGGCCAAATGGGATCCCTATGGCCCCTGCTCGCGCACATGTGGTGGG
GGCGTGCAGCTGGCCAGGAGGCAGTGCACCAACCCCACCCCTGCCAACGGGGGCAAGTAC
TGCGAGGGA
gtgagggtgaaataccgatcctgcaatctggagccctgccccagctcaggtgaggtgggg
agagcagtggtggcctgggcccaggggaggtgaggctggaggtccccccaccccacccct
actccatgtaatgcatggcctccaggtaattgggtacacaggtaattcaggtagtctagt

Exon 13 +      23176      23328   0   Internal    153   100   Excellent
ctttagtgctttcagatggggggaggttgcagctttggtgatgagggtgggaagggctaa
gagagccacggcaggctgggagggaggcttgtcctttgcaccggccttgtcccttcccct
caacttctttcttatgcttctccctccctagcctccggaaagagcttccgggaggagcag
TGTGAGGCTTTCAACGGCTACAACCACAGCACCAACCGGCTCACTCTCGCCGTGGCATGG
GTGCCCAAGTACTCCGGCGTGTCTCCCCGGGACAAGTGCAAGCTCATCTGCCGAGCCAAT
GGCACTGGCTACTTCTATGTGCTGGCACCCAAG
gtgagtgagcctggggcctgagaacaaagtagggaccaggtcttccggggagcatcagct
gagctgccctgctcttccttctttttccccttctggggtgctgcaggtggtggacggcac
gctgtgctctcctgactccacctccgtctgtgtccaaggcaagtgcatcaaggctggctg

Exon 14 +      23435      23555   0   Internal    121   100   Excellent
tgtctccccgggacaagtgcaagctcatctgccgagccaatggcactggctacttctatg
tgctggcacccaaggtgagtgagcctggggcctgagaacaaagtagggaccaggtcttcc
ggggagcatcagctgagctgccctgctcttccttctttttccccttctggggtgctgcag
GTGGTGGACGGCACGCTGTGCTCTCCTGACTCCACCTCCGTCTGTGTCCAAGGCAAGTGC
ATCAAGGCTGGCTGTGATGGGAACCTGGGCTCCAAGAAGAGATTCGACAAGTGTGGGGTG
T
gtgggggagacaataagagctgcaagaaggtgactggactcttcaccaagcccatgtgag
ttctgggccctgaaggtcctgccagggagcaaagggagggaggtggagtttcccagggta
ttggaagcttgggttagactggggtaaatgtcagatccagccagtacccttgctgcagag

Exon 15 +      23816      23872   1   Internal     57    87        Good
gccagggagcaaagggagggaggtggagtttcccagggtattggaagcttgggttagact
ggggtaaatgtcagatccagccagtacccttgctgcagaggccacccatacccttctagg
gctgctagtccttcactcactcattcattcactcattcattcattcattcattctttcag
CAAGCAAAGACGAATGCTGGGGGAAGACCCACTTAACAGGAGATGGTATTCAGGAAG
gtgggcagagttgttaggggctgtatagtgttctagagtaagaccgacctgattcagatc
gcagttacccattttctggatgaccttgggcaagtgaactcaatctccaggtctctagat
gtccccacttgtaaagtgggtataatactaatatatttcatgtgtgctcttgtggggaat

Exon 16 +      25309      25724   1   Internal    416    80        Good
gacctctctgactccaaaacctgtgcttttactcccatgccagaattcaccgaaagctag
gtttactgaggaaaacagatcctggagcataaggtcctcaggtccaggcttctatctgat
gcacggcccccctttcccccgccaggcatggctacaatttcgtggtggccatccccgcag
GCGCCTCAAGCATCGACATCCGCCAGCGCGGTTACAAAGGGCTGATCGGGGATGACAACT
ACCTGGCTCTGAAGAACAGCCAAGGCAAGTACCTGCTCAACGGGCATTTCGTGGTGTCGG
CGGTGGAGCGGGACCTGGTGGTGAAGGGCAGTCTGCTGCGGTACAGCGGCACGGGCACAG
CGGTGGAGAGCCTGCAGGCTTCCCGGCCCATCCTGGAGCCGCTGACCGTGGAGGTCCTCT
CCGTGGGGAAGATGACACCGCCCCGGGTCCGCTACTCCTTCTATCTGCCCAAAGAGCCTC
GGGAGGACAAGTCCTCTCATCCCAAGGACCCCCGGGGACCCTCTGTCTTGCACAACAGCG
TCCTCAGCCTCTCCAACCAGGTGGAGCAGCCGGACGACAGGCCCCCTGCACGCTGG
gtggctggcagctgggggccgtgctccgcgagctgcggcagtggcctgcagaagcgggcg
gtggactgccggggctccgccgggcagcgcacggtccctgcctgtgatgcagcccatcgg
cccgtggagacacaagcctgcggggagccctgccccacctgggagctcagcgcctggtca

Exon 17 +      27010      27092   0   Internal     83    94   Excellent
gatgttgacatttgctaggggctatgcagtctgtggctgatgcagggagttttcagaaag
ttctggagggttctgctgtcactggactggggttggtgctgagctctgggcctggctttg
ggagatgtcaccctgggatagggaggaggaagctgcatttctaatggcttcctcctccag
AGAGGCACGTATATGCAGGCTGACATCCGAGGGTCTGTGTCGCCTCAGACAGCCCTGACA
GTGGCCACAGTCCCGTACCCATT
gtgaggggctggggcatgcctaggagggctaggtgctgaacatctatgtgcctataaact
cgtcttcgttccaaacagctactgctgtctgccctgggcacgtcacgttgcatcctaggc
cttagcttctccactgtttgctacctcagattatgt
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