GENSCAN 1.0	Date run: 15-Jan-104	Time: 02:07:49

Sequence PAK1_1 : 71953 bp : 39.19% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1219   1408  190  0  1   56   14   203 0.523   8.92
tcagtgagtgttagcaatatcatggtgtgcagtggaaggacttgagctagaccctgaagg
aagggctgtataattttgattctttgcaattttttaacatgtatttccttttggtcaaaa
ataataaaagagttatattgttcttatttctgattctagtagctgctgctggtggtgaca
ATGTCAAATAACGGCCTAGACATTCAAGACAAACCCCCAGCCCCTCCGATGAGAAATACC
AGCACTATGATTGGAGCCGGCAGCAAAGATGCTGGAACCCTAAACCATGGTTCTAAACCT
CTGCCTCCAAACCCAGAGGAGAAGAAAAAGAAGGACCGATTTTACCGATCCATTTTACCT
GGAGATAAAA
gtatagtatttgattttcttctcatcatttatatgctttaaaaaaattattttgggtaac
ctggataaaagatctgttgtctttgacttaattttcctttaatgttttctttctggttaa
atatttccctttctccctacagtggctgaagcaaaatggaaaatagacctatttttatac

 1.02 Intr +  13745  13845  101  0  2  112  127   126 0.999  17.81
taaacatgcattgagtatctgctccaatccagatccgtaactgagctcttctacatatgt
gaaatattaatagatagactttgccctctcaaggagactacagctcaataaagagctaaa
ataagcctaaaaacaataatgttcctgttttttatttccttttgcctgtttctcttgcag
CAAATAAAAAGAAAGAGAAAGAGCGGCCAGAGATTTCTCTCCCTTCAGATTTTGAACACA
CAATTCATGTCGGTTTTGATGCTGTCACAGGGGAGTTTACG
gtaagtcctgggtcacagaaaggtctttagtcttttagagttctggctgtgcactgttag
attcaaccctttctcatcttcctgatgcttctatctttgcctgagaccctgattacaatt
ttctcacgttcatgagtgggacactttcatcgccaaaattgtatccagagaagcctttcc

 1.03 Intr +  14351  14498  148  1  1  109   80   132 0.943  13.39
actaattcaatgagaaagatattataaaagaggcttgtgtaaactctgagagtatagaga
gaaaggaatgactaataaatgcatcttttgctgctagcaagtgtcaaagttagctctgat
gttctttcaggctcccctgtgactgtgccttcctgttagtcttgcatgtctctcttacag
GGAATGCCAGAGCAGTGGGCCCGCTTGCTTCAGACATCAAATATCACTAAGTCGGAGCAG
AAGAAAAACCCGCAGGCTGTTCTGGATGTGTTGGAGTTTTACAACTCGAAGAAGACATCC
AACAGCCAGAAATACATGAGCTTTACAG
gtatgagaactgcgtccagggcagtctcagcaagagatggttttaatctgggtgggaaag
ctcacatgcctattagtctgggatgagagaagaaagtagtggaaagagtggaagtggcac
tttaacgtggaattttggaatttgacagccaagatgatggactttgcatcaaacttgagt

 1.04 Intr +  19374  19411   38  1  2  121  111    29 0.749   5.56
aggattaaagaaggtgatatgtataatgcatttagcatgatatctagcctgtagtaccag
tcatactattactattctctgaatctggcacgtgcttgaccagatagacttcttttgctg
tccagaaaaatttaactgtaactgttattgactaagtcccttgtttttcttcctgtgcag
ATAAGTCAGCTGAGGATTACAATTCTTCTAATGCCTTG
gtaagtctttatttactctattttgatgtgggcagatgtggaggtaaggatcaagacagt
gtggtagaggcagagcctgagctgggaggcactcatattagtcactcctgcacccttggc
ctcagaattcctatctatccaataaagaaattagatataataaatagggggtatcccttt

 1.05 Intr +  34722  34841  120  2  0   80   65   170 0.664  13.67
agaagagggagaaacagattgagcttctgagactagctacacaaaggtgagagcttggag
gctaatgtgtatttcagaagggatatcaggatggggtttctcgtgggaggtttggtgatc
ctgatagttaagttccatggcagctggaccagatgcatcttgcttttcttctttgcacag
AATGTGAAGGCTGTGTCTGAGACTCCTGCAGTGCCACCAGTTTCAGAAGATGAGGATGAT
GATGATGATGATGCTACCCCACCACCAGTGATTGCTCCACGCCCAGAGCACACAAAATCT

gtgagtctttggggacctggccagttttgtgatttattagagtaagtggggagagggagg
agttggtgctgatacctagaagtttaatattctggtaggcgtccttagattttggagctg
gtgaaatcactgaactaccttgactaaaggtactttctgtatgattaaagacaaaaaatc

 1.06 Intr +  37897  38071  175  0  1   25   74   244 0.857  15.29
ggccattttacccagaatgggtgggcctgggcacagaggaggagtaatatagattttgac
ataagagaaaggatgagtttattggggtttgctctgtggatgttctaacctcacatctag
gagaggttcccctatgctaacaaaggctggtcttgccaaaattttgcactaataatgcag
GTATACACACGGTCTGTGATTGAACCACTTCCTGTCACTCCAACTCGGGACGTGGCTACA
TCTCCCATTTCACCTACTGAAAATAACACCACTCCACCAGATGCTTTGACCCGGAATACT
GAGAAGCAGAAGAAGAAGCCTAAAATGTCTGATGAGGAGATCTTGGAGAAATTAC
gtaaggaatttgtagctttctgaacctttcttcgttttatgactggtcaagcacagagat
ttgctggtcgtaggcttggtccatgcagctggctggccatgcttggtaccttaggcacag
actgcttctcctcaccctgcccctgaacctcccttccctgtctcacagccctggttggat

 1.07 Intr +  38240  38273   34  0  1  129   69    18 0.671   0.36
tggagaaattacgtaaggaatttgtagctttctgaacctttcttcgttttatgactggtc
aagcacagagatttgctggtcgtaggcttggtccatgcagctggctggccatgcttggta
ccttaggcacagactgcttctcctcaccctgcccctgaacctcccttccctgtctcacag
CCCTGGTTGGATACTATGTTAGGATGGAGATGTG
gtgagagtgtggatagcttactttgagggcagggcatccctcacccctaggcatgtatta
tagcgaagacaaatagtttttctctaatgaatagcctagaatgccatgttgagaaagact
gaggacctagtggaaaagggcactgtgatcaattattgatgttttgccattgacctagga

 1.08 Intr +  44452  44500   49  1  1   62  105    94 0.882   6.26
cattctctgtactacctcttatagcttcttaaatgtgagaatggatgctgcagggagagg
attatttttactgctcttgtttttgacactcacagattgtgtgtagaactgcatttgaca
aatatcactttattgaacactgtgtttttttccctctttctccgccaccttactgttcag
TGCTTCAGGCACCGTGTACACAGCAATGGATGTGGCCACAGGACAGGAG
gtgagtatccaccacccactgttgctcctttagttctgtttctttttatttgggattaat
ttttagcccttgttaggtcaacaggaacagttctaggtttttttttttttttttgggatg
gggtctcactctgtcatccaggctggagtgcagtggcgtgatctctgctcactgcagcct

 1.09 Intr +  49808  49930  123  1  0   56   52   178 0.642  10.86
gctggcttgagacctcactttgaagaccactggtctacatagacaaactgtgaattactc
gagggctaagactgtatcttactcatctttgtttcctgagtacttaaggtctggtactta
gcaggtgctcaataaatgggaatgactatggttgcacattgaatatactcttgatttcag
GTGGCCATTAAGCAGATGAATCTTCAGCAGCAGCCCAAGAAAGAGCTGATTATTAATGAG
ATCCTGGTCATGAGGGAAAACAAGAACCCAAACATTGTGAATTACTTGGACAGGTATGGA
GTG
gtgggtcccatcagagggaaagggcctttgggactgattggtggtgaagctgttagagaa
gagggcagtgccagccctcagaactgcctccatttatgagtcttctgtgatgctgagctc
tctgtatgtgaccctgtgtaatgctggacaccttttttgctgggaaatccttctgtgtta

 1.10 Intr +  51180  51301  122  2  2   73  101    20 0.356   0.17
tctgcatctaaaacactagtaagcttcagtttccttaaagaagaaaagagttgaactttg
acattcccaacactataaagaataaagccttcttctttgagatggctgtgtctccttaat
gtgggtcctgactggctctgaagaatcctctgaaagttagtaccttatcatctctttcag
AACTTATTATACAGAGAATATAGCTCATGCAAACTACTGAAGGCGACAGGGGTATTAGAT
TTTGGTTCAGGATATGGAAAAATGAAAGCTGTCAGTAAGGGTATGGCCTGTCTCACAAAA
TG
gtgagttccccatcagtggatgcatctacatgataaaacgatgttattgaaggaatttgt
gttctgggagtaggattaagagacttatagatttgtttattaatcatatctttaccagta
ttcccagagacttttactctggaaattagaagtaaataatgctatctttgccctcaaata

 1.11 Intr +  52976  53093  118  2  1  106   94   170 0.999  18.95
gattcaaagttagtgattctgttccccagattctgcttttccccaaagtaaagaaccttt
tactttactttgtgctaagacgtagtttcactctgtgtatatgcttagcctttgaaaccc
agtgctatggctcagtgtactctgattgttctctctcaccctttatctgtattcctgcag
TTACCTCGTGGGAGATGAGCTGTGGGTTGTTATGGAATACTTGGCTGGAGGCTCCTTGAC
AGATGTGGTGACAGAAACTTGCATGGATGAAGGCCAAATTGCAGCTGTGTGCCGTGAG
gtaaggccaagggccaagcagtcttgggtagaaagctgcctccatattcctgtctcctga
agttccctgtacagtgagatctcagcctgggctctgtggaattggtagaaattagtgctg
acactgctatcattcctgtattgtacctgtgtttgtcatttctatcaccatgattttttt

 1.12 Intr +  56316  56415  100  2  1   33   97   102 0.742   4.36
agatggaagacttgtttctagatctggctctgcgattgatttggggcaagtccttttact
cactggggccttacttcctttattttaaagtgaagaggttgaattagtggattttctatt
aagtcttctgtattatatgtatgtcctttctttctccccctgcccacaccacttcaatag
TGTCTGCAGGCTCTGGAGTTCTTGCATTCGAACCAGGTCATTCACAGAGACATCAAGAGT
GACAATATTCTGTTGGGAATGGATGGCTCTGTCAAGCTAA
gtaagtaggagccttaggaatgataatacttctctgcctgtggggccctgtctcctgtga
gatggtcatcatataatagtaactacgacactcaccaaagggtctttatgatttcatggg
atatgagggctgttttatattttctgtattaatcataggatatcatttcattattttttc

 1.13 Intr +  57457  57653  197  2  2  110   70   231 0.998  21.71
ataggaaataggctaggagctagacatgaaggtggtagtcaagtgactttggagagacaa
aggatagcagagctggaagccaggcggatcttgtcacctatgtgtaggtacacagtcaac
acttactgaagtgagtgtatatcctaaatgtatgttctttctcttatttttcttttctag
CTGACTTTGGATTCTGTGCACAGATAACCCCAGAGCAGAGCAAACGGAGCACCATGGTAG
GAACCCCATACTGGATGGCACCAGAGGTTGTGACACGAAAGGCCTATGGGCCCAAGGTTG
ACATCTGGTCCCTGGGCATCATGGCCATCGAAATGATTGAAGGGGAGCCTCCATACCTCA
ATGAAAACCCTCTGAGA
gtgagtgttaccagttctatttcaagttatttgggctgttgtctctagtcccaggaaata
agaatccagggtgttctctgtggttttcaacctggagatcccttttctggatacaactag
tcactgttgaacttaaagtataaatggccaaagaaaaggaatattagaagtcactcattc

 1.14 Intr +  58099  58170   72  0  0   74   54    79 0.523   1.78
ggtaaatgctgtgagaaaaagcaaagtaagggagttaacagagtaatggaggaacaggtg
tgctattttagagtagagagggaagttctctcttataagttattttattctgcagagttg
ggaagtcattagagggttttgagctgaggagtaatgtgatctgatttatgttttaaacag
ATCATTTTGGCCGCTTTTATGGAAAATAGACTGCGAGAGACTGTTGTAATAGTTCAGAGT
GGTGGTGTCTTG
gtaggagtggaagtgagaagtggtcagattcaggaaattaaaggactagctgacaagatg
aactgaatattagagaaagaggaatcagcaatgactacaagatttctggtctgaattgct
gaaaaaattcagttgccatctgttgaaatggtgaagagcatacttaagttgggtaataaa

 1.15 Term +  60872  61039  168  1  0   49   31   273 0.533  14.60
tcccatggcctttaaatgttcaacctgatccttaggtcatactctttccagtatatatac
acagctgctactttgcatcctagagcataaagcagctgaccatatttctagaacttgtat
atggggaacaagagagagcctcatttggagctcaaggtgattcaccatttttattgccag
GCCTTGTACCTCATTGCCACCAATGGGACCCCAGAACTTCAGAACCCAGAGAAGCTGTCA
GCTATCTTCCGGGACTTTCTGAACCGCTGTCTCGAGATGGATGTGGAGAAGAGAGGTTCA
GCTAAAGAGCTGCTACAGGTAACTGTCCTTATGCAGGGAAGCACCTAA
ttcagggaatcactaaaccaggccttttttacttcatgtttgtaaggtactggatattat
agaactaggcttctcttctaccacttcctacactcactctgttcctactgcccttttatc
cctgggcctttgctcatttattttcttagcctttctcagcctgttaaaactctacacgtt

 2.02 PlyA -  61181  61176    6                               1.05
 2.01 Sngl -  63726  62656 1071  0  0   60   50   223 0.892  12.57
 2.00 Prom -  63786  63747   40                             -10.15

 3.03 PlyA -  63934  63929    6                               1.05
 3.02 Term -  65017  64380  638  2  2   21   45   258 0.603   8.22
 3.01 Init -  65556  65106  451  0  1   49   20   159 0.735   1.32
 3.00 Prom -  65649  65610   40                              -6.15

 4.02 PlyA -  65818  65813    6                               1.05
 4.01 Sngl -  66792  66046  747  0  0   58   43   423 0.981  30.73

Predicted peptide sequence(s):


>PAK1_1|GENSCAN_predicted_peptide_1|584_aa
MSNNGLDIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGSKPLPPNPEEKKKKDRFYRSILP
GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKN
PQAVLDVLEFYNSKKTSNSQKYMSFTDKSAEDYNSSNALNVKAVSETPAVPPVSEDEDDD
DDDATPPPVIAPRPEHTKSVYTRSVIEPLPVTPTRDVATSPISPTENNTTPPDALTRNTE
KQKKKPKMSDEEILEKLPLVGYYVRMEMCASGTVYTAMDVATGQEVAIKQMNLQQQPKKE
LIINEILVMRENKNPNIVNYLDRYGVNLLYREYSSCKLLKATGVLDFGSGYGKMKAVSKG
MACLTKCYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVI
HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVD
IWSLGIMAIEMIEGEPPYLNENPLRIILAAFMENRLRETVVIVQSGGVLALYLIATNGTP
ELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQVTVLMQGST

>PAK1_1|GENSCAN_predicted_peptide_2|356_aa
MSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNVPYSWVGRINIV
KMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAESILSPKNKAGGITLP
DFKLYYKATVTKTAWYWYQNRDIDQWSRTEPSEITPHIYNYLIFDKRDKNKQWGKDSLFN
KWCWENWLAICRKLKLDPFLTPYTKINSRWIRDLNVRPKMIKTLEENLGNTIQDIGMGKD
FMSKTPKAMATKAKIDKWDLIKLKSFCTAKETTIRVNRQPTGWEKIFATYSSDKGLISRI
YNELKQIYKKKTNNPIKKWAKDMNRHFSKEDIYIAKKHIKNAHHHWPSGKCKSKPQ

>PAK1_1|GENSCAN_predicted_peptide_3|362_aa
MGDFNTPLSTLDRSTRQKVNKDTQELNSALQQEDLIDIYRTLHPKSTEYTFFSAPHHTYS
KIDHIVGSKALLSKCKRTEIITNCLSDHSAIKLELRIKKLTQNCSTTWKLNNLLPNDYWV
NNEMKAEIKMFFETNENKDNIPESLGHIQSKLEKQEQTHSKASRRQEITKIRAELKEIET
QKTLQKINESRSWFFERINKIDRPLARLIKKKREKNQIDAIKNDKGEITTDPTEIQTTIR
EYYKHLYANQLENLEEMDKFLDTYILPRLNQEEAESLNRPITGSEIEAIINSLPTKKSPG
PDGFTAELYQRYKEEMVPFLLKLFQSTEKEGILPNSFYEASIILIPKPGRDTTKKENFSQ
YP

>PAK1_1|GENSCAN_predicted_peptide_4|248_aa
MELKTKARELRDECRSLRSRCDQLEERVSVMEDEMNEMKREEKFREKRIKRNEQSLQEIW
DYVKRPNLRLIGIPESDGENGTKLENTLQYIIQENFPNLARQANIQIQEIQRMPQRYSSR
RATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLKADLSAETLQARREWGPIFNI
LKEKNFQPRISYPAKLSFISEGEIKSFTDKQMLRDFVTTRPALQELLKEALNMERNNQYQ
PLQKHAKL