GENSCAN 1.0 Date run: 15-Jan-104 Time: 01:33:05 Sequence ESRRA_1 : 13566 bp : 57.78% C+G : Isochore 4 (57 - 100 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Term + 172 275 104 2 2 91 42 193 0.987 14.37 actcagcacccttagagatgcaaagttccccaggctaacacagacctgagtgccctgcgc tactgctacctcgaatcatctgcggttcctcgaatcacacatgcggcgccccctggtggg gagacctttcggttgctcactgccctgagccgagctctgccctcctcctagGCTACCAGTTAGGGATCGGCAGGGACCACTTCCTGACTAAGGAGCTGCAGCGATACATCG AAGGGCTCAAGAAGCGCCGGAGCAAGAGGCTGTACGTGAATTAA aaacgccaccttgggctcgagcagcgacccgaaccagccccgtgccagcccggtccccag acccaagcctgaccccatccgagtggaatttgagtcctaaagaaataaaagagtcgatgc atggtccgtgagtcagtgcaggacagcccgcgtgaggcggacgcacgtggccccgccctt 2.01 Init + 1422 1559 138 2 0 77 56 82 0.034 2.17 gcgcggtggggcggcgcggcccgaggaggcggcggaggaggggccgcccgcggcccccgg ctcactccggcactccgggccgctcggcccccatgcctgcccgaccgcgctgccggagcc ccaggtccgggggcggaggggagcgctgccgcgggggtgggcgggcggggcgcgggggcc ATGTGCGAGCGCGGCAGGGAGGCGGGCGGGGCGGGCTGCAGGCGGGGTCCGACTCTGGGG CCAGTCCGGGCCACGGTTGGGACCCAGTCGAGGGTCGGACTGGTCAGGGTTCAGGCGGGA TCCGGCGTCCGAGTCCTG gtgggccggcctggggcaggatctggctctggctgcgggtcctgactcgggtcagggttg ggcctccgatccagcccgctccggggcagggttcaatcccgcatttgccgaagtccctgg ggctggccggggtggaagacggggagggctctatgtctgggaaggggctctgaagaccac 2.02 Intr + 2797 3133 337 0 1 77 84 377 0.023 32.58 aacagctaggagggggcagtgttcctgggcagtccttccttggactctgccccccttctt ccccacttgctgggcttggaagcctggccctaggcccgaggttgggcaacccgtgtggca gggtgtctcccatcccccataccagtgctttcctgcgaacctatgggtctctccgtgcag GTGACCAGCGCCATGTCCAGCCAGGTGGTGGGCATTGAGCCTCTCTACATCAAGGCAGAG CCGGCCAGCCCTGACAGTCCAAAGGGTTCCTCGGAGACAGAGACCGAGCCTCCTGTGGCC CTGGCCCCTGGTCCAGCTCCCACTCGCTGCCTCCCAGGCCACAAGGAAGAGGAGGATGGG GAGGGGGCTGGGCCTGGCGAGCAGGGCGGTGGGAAGCTGGTGCTCAGCTCCCTGCCCAAG CGCCTCTGCCTGGTCTGTGGGGACGTGGCCTCCGGCTACCACTATGGTGTGGCATCCTGT GAGGCCTGCAAAGCCTTCTTCAAGAGGACCATCCAGG gtgagcccccagcccactcccctgtcctttgccctgcaccctctgggtacactgctgggt gcaataggccccctgatggctgtggcaccgcttgaggctaacaatctggtgtttccagtc cctctacctcccagagacactctttccctgagaagtatggtaaaagcaccgggtgtgctg 2.03 Intr + 9580 9696 117 2 0 67 84 266 0.915 25.71 ggcagggctcccccgcccagcagccactcccctccctgcctgctcatggccccctgctct ccctttcctccccatacccccagacctgtgcttgcccggggagagtcagggctctcctgt cagctgggtcccctcccagccccgggaggccgccactggagccctgcctcttcctggcag GGAGCATCGAGTACAGCTGTCCGGCCTCCAACGAGTGTGAGATCACCAAGCGGAGACGCA AGGCCTGCCAGGCCTGCCGCTTCACCAAGTGCCTGCGGGTGGGCATGCTCAAGGAGG gtgagcgctgggcaggggctgggcgagggctgggggagtcggggacccgggccaggtggg ggtgaggcctgggagttctggtgagtggactcggggaggacagctctggagagcaagccc caccctgcccacagcaccacagtcacagtcctatctgtcccacaattcaaggagtgcgcc 2.04 Intr + 9868 9996 129 2 0 12 94 134 0.985 8.24 tcaaggagggtgagcgctgggcaggggctgggcgagggctgggggagtcggggacccggg ccaggtgggggtgaggcctgggagttctggtgagtggactcggggaggacagctctggag agcaagccccaccctgcccacagcaccacagtcacagtcctatctgtcccacaattcaag GAGTGCGCCTGGACCGCGTCCGGGGTGGGCGGCAGAAGTACAAGCGGCGGCCGGAGGTGG ACCCACTGCCCTTCCCGGGCCCCTTCCCTGCTGGGCCCCTGGCAGTCGCTGGAGGCCCCC GGAAGACAG gtgagagcactgtgggtacctggggctacgaaaccggaggcctatgtgtggcatcatagt taccttgggcactgggacctgtatttccccttcgtctcttcactcactcatttccccaag acatgtgaaactgccttttcctgcatcaggaaaagtagtagaactgggaacagggacgat 2.05 Intr + 10370 10540 171 0 0 73 103 258 0.849 26.91 cagcctgtccacaaacacacgggctttccctgggagacagttagcgctcttccctggagg gaagtcactggacagctgctactgaggaaggccacagggggagccactgtgggaagatgc ttgacccctgaggcctgacagattcgagtgctcctgactcttgtcctctaattgtcacag CAGCCCCAGTGAATGCACTGGTGTCTCATCTGCTGGTGGTTGAGCCTGAGAAGCTCTATG CCATGCCTGACCCCGCAGGCCCTGATGGGCACCTCCCAGCCGTGGCTACCCTCTGTGACC TCTTTGACCGAGAGATTGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAG gtaaagggcccaggtgacccggggctgccctgaacgggcccggctctggtgcgcttgctc agccaggcccgctccccgctgccccctaggcttctcatcgctgtcgctgtctgaccagat gtcagtactgcagagcgtgtggatggaggtgctggtgctgggtgtggcccagcgctcact 2.06 Intr + 10630 10899 270 2 0 89 109 325 0.984 33.46 cctgatgggcacctcccagccgtggctaccctctgtgacctctttgaccgagagattgtg gtcaccatcagctgggccaagagcatcccaggtaaagggcccaggtgacccggggctgcc ctgaacgggcccggctctggtgcgcttgctcagccaggcccgctccccgctgccccctag GCTTCTCATCGCTGTCGCTGTCTGACCAGATGTCAGTACTGCAGAGCGTGTGGATGGAGG TGCTGGTGCTGGGTGTGGCCCAGCGCTCACTGCCACTGCAGGATGAGCTGGCCTTCGCTG AGGACTTAGTCCTGGATGAAGAGGGGGCACGGGCAGCTGGCCTGGGGGAACTGGGGGCTG CCCTGCTGCAACTAGTGCGGCGGCTGCAGGCCCTGCGGCTGGAGCGAGAGGAGTATGTTC TACTAAAGGCCTTGGCCCTTGCCAATTCAG gtgagtctggggcaggcactgacaggtgaggtgtctccgtaaggtcttcaggttaactca gtgacggtagcacagccccattttgcagataacgaaaactgaggcttagggaagaacaat gacttgctagaagtcaaaaagcaagccaagtgcaggctccaaactgcacacaggattttg 2.07 Term + 11336 11595 260 0 2 114 54 349 0.999 30.82 gagggagagagggtggggtcctggcccacgagccgcagcaatgagtggtgcctctcagtc agccaatcaacaaatcctcgtttggctcttccttaggccccatccagcagtgctcaagat acggggagtgcccttgccagagatagcccaggccaacaccacattcctctcttcttgcag ACTCTGTGCACATCGAAGATGCCGAGGCTGTGGAGCAGCTGCGAGAAGCTCTGCACGAGG CCCTGCTGGAGTATGAAGCCGGCCGGGCTGGCCCCGGAGGGGGTGCTGAGCGGCGGCGGG CGGGCAGGCTGCTGCTCACGCTACCGCTCCTCCGCCAGACAGCGGGCAAAGTGCTGGCCC ATTTCTATGGGGTGAAGCTGGAGGGCAAGGTGCCCATGCACAAGCTGTTCTTGGAGATGC TCGAGGCCATGATGGACTGA ggcaaggggtgggactggtgggggttctggcaggacctgcctagcatggggtcagcccca agggctggggcggagctggggtctgggcagtgccacagcctgctggcagggccagggcaa tgccatcagcccctgggaacaggccccacgccctctcctccccctcctagggggtgtcag 3.05 PlyA - 12211 12206 6 1.05 3.04 Term - 12597 12490 108 0 0 131 38 151 0.999 13.83 3.03 Intr - 12776 12687 90 2 0 62 78 113 0.978 9.05 3.02 Intr - 13077 12893 185 1 2 91 64 178 0.876 16.41 3.01 Intr - 13301 13120 182 1 2 52 18 182 0.410 8.32 Predicted peptide sequence(s): >ESRRA_1|GENSCAN_predicted_peptide_1|34_aa XYQLGIGRDHFLTKELQRYIEGLKKRRSKRLYVN >ESRRA_1|GENSCAN_predicted_peptide_2|473_aa MCERGREAGGAGCRRGPTLGPVRATVGTQSRVGLVRVQAGSGVRVLVTSAMSSQVVGIEP LYIKAEPASPDSPKGSSETETEPPVALAPGPAPTRCLPGHKEEEDGEGAGPGEQGGGKLV LSSLPKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKA CQACRFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKT AAPVNALVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFS SLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALL QLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPG GGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEMLEAMMD >ESRRA_1|GENSCAN_predicted_peptide_3|188_aa XSHKHEKFQQVRHFRFSWLSNSIERSIPGSEAAEDDLFPVPAWREFVRRHETAYPQSAEL ACTRRRQSSLFGRDGGPGSSACLNSSALQATEVRICPVEFNPNFVARMIPKVEWSAFLEA ADNLRLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPNML LSEEETES