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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (6770 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1523       1707   2   Internal    185    73        Good
tttcttaaaaaacagcaacttgtttgctacttttatttctgttgatttttttttcttggt
gtgtgtggtggttgtttttaagtgtggagggcaaaaggagataccatcccaggctcagtc
caacccctctccaaaacggcttttctgacactccaggtagcgagggagttgggtctccag
GTTGTGCGAGGAGCAAATGATGACCGCCAAGGCCGTAGACAAAATCCCAGTAACTCTCAG
TGGTTTTGTGCACCAGCTGTCTGACAACATCTACCCGGTGGAGGACCTCGCCGCCACGTC
GGTGACCATCTTTCCCAATGCCGAACTGGGAGGCCCCTTTGACCAGATGAACGGAGTGGC
CGGAG
gtaagccgcgtgtcttcgcaggcccggacctgcgcggcccggaggtggtggatggggtgc
agtgggtgtgcgggaatcgcaggagaggattggggctccaggtggacggtgctgactgca
ctggctttgaagactggaagtgggtgcaggaggaacctgcgacagctgagaccagggcgc

Exon  2 +       3100       3275   1   Internal    176   100   Excellent
gttgggctggcctcttcttacagtctgtgggcctcaatttccccaccttttggactttgc
cacagctctacagtgctgagactctcggccttggaaatggacctatgtgagcgggggtga
gaagggagtcctggctgtattttcattgttccacctccattctgcctttcccctccccag
ATGGCATGATCAACATTGACATGACTGGAGAGAAGAGGTCGTTGGATCTCCCATATCCCA
GCAGCTTTGCTCCCGTCTCTGCACCTAGAAACCAGACCTTCACTTACATGGGCAAGTTCT
CCATTGACCCTCAGTACCCTGGTGCCAGCTGCTACCCAGAAGGCATAATCAATATT
gtgagtgcaggcatcttgcaaggggtcacttccccagcttcaaccacagcctcatccagc
gtcacctctgcctcccccaacccactggccacaggacccctgggtgtgtgcaccatgtcc
cagacccagcctgacctggaccacctgtactctccgccaccgcctcctcctccttattct

Exon  3 +       3466       4232   1   Internal    767    83        Good
gcatcttgcaaggggtcacttccccagcttcaaccacagcctcatccagcgtcacctctg
cctcccccaacccactggccacaggacccctgggtgtgtgcaccatgtcccagacccagc
ctgacctggaccacctgtactctccgccaccgcctcctcctccttattctggctgtgcag
GAGACCTCTACCAGGACCCTTCTGCGTTCCTGTCAGCAGCCACCACCTCCACCTCTTCCT
CTCTGGCCTACCCACCACCTCCTTCCTATCCGTCCCCCAAGCCAGCCACGGACCCAGGTC
TCTTCCCAATGATCCCAGACTATCCTGGATTCTTTCCATCTCAGTGCCAGAGAGACCTAC
ATGGTACAGCTGGCCCAGACCGTAAGCCCTTTCCCTGCCCACTGGACACCCTGCGGGTGC
CCCCTCCACTCACTCCACTCTCTACAATCCGTAACTTTACCCTGGGGGGCCCCAGTGCTG
GGGTGACCGGACCAGGGGCCAGTGGAGGCAGCGAGGGACCCCGGCTGCCTGGTAGCAGCT
CAGCAGCAGCAGCAGCCGCCGCCGCCGCCGCCTATAACCCACACCACCTGCCACTGCGGC
CCATTCTGAGGCCTCGCAAGTACCCCAACAGACCCAGCAAGACGCCGGTGCACGAGAGGC
CCTACCCGTGCCCAGCAGAAGGCTGCGACCGGCGGTTCTCCCGCTCTGACGAGCTGACAC
GGCACATCCGAATCCACACTGGGCATAAGCCCTTCCAGTGTCGGATCTGCATGCGCAACT
TCAGCCGCAGTGACCACCTCACCACCCATATCCGCACCCACACCGGTGAGAAGCCCTTCG
CCTGTGACTACTGTGGCCGAAAGTTTGCCCGGAGTGATGAGAGGAAGCGCCACACCAAGA
TCCACCTGAGACAGAAAGAGCGGAAAAGCAGTGCCCCCTCTGCATCG
gtgccagccccctctacagcctcctgctctgggggcgtgcagcctgggggtaccctgtgc
agcagtaacagcagcagtcttggcggagggccgctcgccccttgctcctctcggacccgg
acaccttgagatgagactcaggctgatacaccagctcccaaaggtcccggaggccctttg

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