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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (6049 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +        539        666   2   Internal    128    79        Good
gcgctcggctcctggacccctccccacctcggtctaagggggcgcggtccagaccccggg
tcttgcgtttcccgcagacagcatcgcggctgggaggacacgtagccgcttcttccctaa
gcggaggtctgaactccggcttgtaccacttccccgtgggtgctgtccattccgccccag
GGGTTCCATCCGAAGCCGCGCCTTCCTCCCTCTCCAGGACCCCTTTCTCCCCAGCCTCCA
GGAGCACCTGCGGACCGCGTCGGCTCTGGCCCGGAGCTGGGCTGCTCCAGACGTAACTCA
CACCGGAG
gttacttccctcgatttgggcggggattcccttccatttttttcttcccttttctcccaa
gatccagcttcttgggggcactcacgggtgcccgttgcgttctgctccgtcggcccggag
ctgcatggccaactcccagcaggggccgctcctcccctaccccccacccccgggctccct

Exon  2 +       1940       3432   1   Terminal   1493    87        Good
tctctcccgccgcttagaaataaaacttggctgtattaggagctcggagcaagaaggcgc
ccaccgagagcgtctgaagcgcgagccaggcgcagttcgcgggacccgggccatgggccg
ctagcggtcctccagttcgggcccggcctccctgcggccccctccctatgtgagccgcag
CCAGGCGAGCGGGGCGCCGGAGGAAGAGGAGGACCCACGGGCGCCGGGCCGGAAGGCAGC
TGGCAGCAGGCCCAGGCCAGCGGGCGCCCGCGTTCATGTTCCGCCAGGAGCAGCCGTTGG
CCGAGGGCAGCTTTGCGCCCATGGGCTCCCTGCAGCCGGACGCGGGCAACGCGAGCTGGA
ACGGGACCGAGGCGCCGGGGGGCGGCGCCCGGGCCACCCCTTACTCCCTGCAGGTGACGC
TGACGCTGGTGTGCCTGGCCGGCCTGCTCATGCTGCTCACCGTGTTCGGCAACGTGCTCG
TCATCATCGCCGTGTTCACGAGCCGCGCGCTCAAGGCGCCCCAAAACCTCTTCCTGGTGT
CTCTGGCCTCGGCCGACATCCTGGTGGCCACGCTCGTCATCCCTTTCTCGCTGGCCAACG
AGGTCATGGGCTACTGGTACTTCGGCAAGGCTTGGTGCGAGATCTACCTGGCGCTCGACG
TGCTCTTCTGCACGTCGTCCATCGTGCACCTGTGCGCCATCAGCCTGGACCGCTACTGGT
CCATCACACAGGCCATCGAGTACAACCTGAAGCGCACGCCGCGCCGCATCAAGGCCATCA
TCATCACCGTGTGGGTCATCTCGGCCGTCATCTCCTTCCCGCCGCTCATCTCCATCGAGA
AGAAGGGCGGCGGCGGCGGCCCGCAGCCGGCCGAGCCGCGCTGCGAGATCAACGACCAGA
AGTGGTACGTCATCTCGTCGTGCATCGGCTCCTTCTTCGCTCCCTGCCTCATCATGATCC
TGGTCTACGTGCGCATCTACCAGATCGCCAAGCGTCGCACCCGCGTGCCACCCAGCCGCC
GGGGTCCGGACGCCGTCGCCGCGCCGCCGGGGGGCACCGAGCGCAGGCCCAACGGTCTGG
GCCCCGAGCGCAGCGCGGGCCCGGGGGGCGCAGAGGCCGAACCGCTGCCCACCCAGCTCA
ACGGCGCCCCTGGCGAGCCCGCGCCGGCCGGGCCGCGCGACACCGACGCGCTGGACCTGG
AGGAGAGCTCGTCTTCCGACCACGCCGAGCGGCCTCCAGGGCCCCGCAGACCCGAGCGCG
GTCCCCGGGGCAAAGGCAAGGCCCGAGCGAGCCAGGTGAAGCCGGGCGACAGCCTGCCGC
GGCGCGGGCCGGGGGCGACGGGGATCGGGACGCCGGCTGCAGGGCCGGGGGAGGAGCGCG
TCGGGGCTGCCAAGGCGTCGCGCTGGCGCGGGCGGCAGAACCGCGAGAAGCGCTTCACGT
TCGTGCTGGCCGTGGTCATCGGAGTGTTCGTGGTGTGCTGGTTCCCCTTCTTCTTCACCT
ACACGCTCACGGCCGTCGGGTGCTCCGTGCCACGCACGCTCTTCAAATTCTTCTTCTGGT
TCGGCTACTGCAACAGCTCGTTGAACCCGGTCATCTACACCATCTTCAACCACGATTTCC
GCCGCGCCTTCAAGAAGATCCTCTGTCGGGGGGACAGGAAGCGGATCGTGTGA
ggtttccgctggcgcccgcgtagactcacgctgactgcaggcagcggggggcatcgaggg
gtgcttagccccagggcactcagaaacccgggcgctgcctgctctgcgtttcctcgtctg
gggtggctctgcagcctcctgcgggcgggcgtctgctgctcctacaagggaagcttcttg

Exon  3 +       2713       3432   0     Single    720    67    Marginal
gccatcatcatcaccgtgtgggtcatctcggccgtcatctccttcccgccgctcatctcc
atcgagaagaagggcggcggcggcggcccgcagccggccgagccgcgctgcgagatcaac
gaccagaagtggtacgtcatctcgtcgtgcatcggctccttcttcgctccctgcctcatc
ATGATCCTGGTCTACGTGCGCATCTACCAGATCGCCAAGCGTCGCACCCGCGTGCCACCC
AGCCGCCGGGGTCCGGACGCCGTCGCCGCGCCGCCGGGGGGCACCGAGCGCAGGCCCAAC
GGTCTGGGCCCCGAGCGCAGCGCGGGCCCGGGGGGCGCAGAGGCCGAACCGCTGCCCACC
CAGCTCAACGGCGCCCCTGGCGAGCCCGCGCCGGCCGGGCCGCGCGACACCGACGCGCTG
GACCTGGAGGAGAGCTCGTCTTCCGACCACGCCGAGCGGCCTCCAGGGCCCCGCAGACCC
GAGCGCGGTCCCCGGGGCAAAGGCAAGGCCCGAGCGAGCCAGGTGAAGCCGGGCGACAGC
CTGCCGCGGCGCGGGCCGGGGGCGACGGGGATCGGGACGCCGGCTGCAGGGCCGGGGGAG
GAGCGCGTCGGGGCTGCCAAGGCGTCGCGCTGGCGCGGGCGGCAGAACCGCGAGAAGCGC
TTCACGTTCGTGCTGGCCGTGGTCATCGGAGTGTTCGTGGTGTGCTGGTTCCCCTTCTTC
TTCACCTACACGCTCACGGCCGTCGGGTGCTCCGTGCCACGCACGCTCTTCAAATTCTTC
TTCTGGTTCGGCTACTGCAACAGCTCGTTGAACCCGGTCATCTACACCATCTTCAACCAC
GATTTCCGCCGCGCCTTCAAGAAGATCCTCTGTCGGGGGGACAGGAAGCGGATCGTGTGA

ggtttccgctggcgcccgcgtagactcacgctgactgcaggcagcggggggcatcgaggg
gtgcttagccccagggcactcagaaacccgggcgctgcctgctctgcgtttcctcgtctg
gggtggctctgcagcctcctgcgggcgggcgtctgctgctcctacaagggaagcttcttg

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