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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (56265 bp)
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PERCEVAL Exon Candidates (12 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +      10557      10916   0     Single    360    45    Marginal
agctttgcaccaagaggcatctcctggacacaacccacaacctccacctgtgggagaaaa
gtagagcaggaggaccccagcatcctttgccaccaatgcaaacattgaccacttttacca
ctgaggacccctgcagtttccaccagtgatgatctcaactgacagagctttccagggtcc
ATGCTGCTGTGTCCCCCTGGAGAAGAAGCTGCTGTGTCCCCAGTGGCCAAGATTACCAAC
TCACCGTCTCACAATTGCATGTATGCTCTAGACCCCAGAGCCAAGGCTGCTACATGTATG
ATGGACACTTCTGACACTGGCACCACCACTGCCATGGGCACACCTGTACCCCAGATCATA
GAGCCATGGCTGTTCTGTGTGCAACCAAGCATCAAATACCAGCACCACTACCAACATGAG
CACACCTGCACTGTGGATCTGGCACAAAAAGGGATCCCATCAGCTGTGAAGTTCCCCCAA
GCAGGAATAAGAGAACAGGAAAATGCCAGCAGCCTTTGCTGTTGCATTTGGGTGGGGTAG

tcaataataatttaccctatacatgtctttatatttagagtacccaagcaactttttctg
ctgctgtgtacacccacagccttggctgctgagggcctccagagccattggccatgctga
tctcagctgatggagctttatagagagtatgctgctgtacccaccatggagttggagctg

Exon  2 +      13376      13422   0    Initial     47    49    Marginal
aaaatacaaaaattagccggttgtggtggcaggcacctgtaatcccagctacttgggagg
ctgaggcaggagaatcgctggaacctgggagacagaagttgcagtgagccaagatcacac
cactgcactccagcctgggagacagagtgagactccattttaaaaaaaattttttttcta
ATGGATATACAGTATAAAAACAAGCCAGCAGCCAACAAGATCACAAA
gtgtgcaggggtgcagggatggagagtaaaagtctagtgtttttgtaagcaattgaagtt
aagtttttttgttgttgttgttttatttttgagacggggtctcgctctgtctcccaggct
ggagcgcagtgtcgcatctctgctcactgcaagctctgcctcctgggttcacaccattct

Exon  3 +      14221      14416   0    Initial    196    42    Marginal
ttgggaggctgaggcaggagaatcacgtgaacttgggaggtggaagttgcagccagtcaa
tatcacaccactgcactcagcctgggtgacagagtaagactccgtctcaaaaaaaaaaaa
aaaaaagagaagacagtacaaccgataccacagaaacaaaaagatgtataaaggactatt
ATGAACAATTACATGCCAACAAACAGGAACAAACAGGATCACCTAGAAGAAATGGATAAA
TTTCTAGAAACATACAACCTACCAAAACTGAAGCAAAAAATAGAAAGCCTGAACAGACCA
ATAAAAAATAAGGCAACTGAATCAGTACTCAAAAAATCTCCCAAAAAAGAAAGCCCAGAA
CCAGATGGCTTCATAG
gtgaattctaccaagcattttaaaaagaatgaacacctaatctttcttaaactcttgtga
aaaatagaagaaaagggaacacttcagaagttattctgcaaggccaaaattaccctgata
ccaaaaccagacaaagatactccgagaaaagaaaacctcaggccaatatacctgattaac

Exon  4 +      17120      17219   2   Terminal    100    58    Marginal
gcactctagcctgggcaacatagatacacacacacacacacacacacacacacacacaca
cacacatatacacacacacacacattatagtaatgaaaacagtatggtacttgcataaaa
acaatatatagagcaaagggacagaatagagctcccagaaacaaatccatgcatctatag
TCAACTGATCTTCAACAAGGATGCCAATAACACACAATTGGAAAAGGATCATCTCCTTGA
TAGTGTTGGAAAAACTGGATATACAAATGCAGAAGGATGA
aattggatccatgtctcacactatatacaaaaatcaactcaaaaaggattacagatctaa
gcttaaaagctaaaaccataaaactcctagaagaaaacataggggaacattttcttgata
ttggcctgggaaatgattttttttttgatgtgacacaaaaagcacaagcaacagaagcaa

Exon  5 +      43046      43227   0    Initial    182    64    Marginal
aacttgcgcccctctcggggatcctcctcccgggctctggaccccaggtgatcctaggtc
cccagccgccggcgaacaccatggccccccaggggggtgaggtaggagcagcctgagtac
ccccagaaggtgccccgtccacgcccctccgggctgcgcggcgggagtcttcggggagct
ATGCTGAGACCGGGTGGTGCGGAGGAAGCTGCGCAGCTCCCGCTTCGGCGCGCCAGCGCC
CCGGTCCCTGTGCCGTCGCCCGCGGCCCCCGACGGCTCCCGGGCTTCGGCCCGCCTAGGT
CTTGCCTGCCTTCTGCTCCTGCTGCTGCTGACGCTGCCGGCCCGCGTAGACACGTCCTGG
TG
gtaagtgtggctctcaggctgggcgggtgaggcgcttggtaggagaggccggaggcgcct
ggagggactggctgctcacgggaccaggctgttgcttcgacgggttggagacgattcggg
caggactgtcactgaaatctgaagtcgcggggtggcgggagggtgaggcgccgcgtctta

Exon  6 +      48657      48877   2   Internal    221    94   Excellent
ctattaatacttcttcagaactgtgggaaatggttctactcatcagctttatggaatgtg
ggttagggagaggggacagaatctcttcaaggtctggatgctaaacgtaccccttcctta
ttccctcccaatgcagaaaaaggtctgggatgttctgacagggccatctctgccttgcag
GTACATTGGGGCACTGGGGGCACGAGTGATCTGTGACAATATCCCTGGTTTGGTGAGCCG
GCAGCGGCAGCTGTGCCAGCGTTACCCAGACATCATGCGTTCAGTGGGCGAGGGTGCCCG
AGAATGGATCCGAGAGTGTCAGCACCAATTCCGCCACCACCGCTGGAACTGTACCACCCT
GGACCGGGACCACACCGTCTTTGGCCGTGTCATGCTCAGAA
gtaagagcctcttccatcctgtgtcagctccttccctttctgtgctgggggtggtgagtg
ggaagagtaggcaagatctcccctctcctctcccacacactgtttcatcatcagagaaag
aactgtgggcagagcccaggatataattgggaacagactcttagcatcttagatttgtag

Exon  7 +      50020      50218   2   Internal    199   100   Excellent
cagagtcagaggttgtatgggctgaagaaggggacagacatgggcctctttcctgaagca
cacctctacaattctctctctaggtagccgagaggcagcttttgtatatgccatctcatc
agcaggggtagtccacgctattactcgcgcctgtagccagggtgaactgagtgtgtgcag
CTGTGACCCCTACACCCGTGGCCGACACCATGACCAGCGTGGGGACTTTGACTGGGGTGG
CTGCAGTGACAACATCCACTACGGTGTCCGTTTTGCCAAGGCCTTCGTGGATGCCAAGGA
GAAGAGGCTTAAGGATGCCCGGGCCCTCATGAACTTACATAATAACCGCTGTGGTCGCAC
GGTCAGTACTCATGTCTGT
gtaagtacactcatatttgctgggggtgaccagtgtgtgtgaccatggactaaataaatg
tgaagatggaagagctgaaggcttctgggtcacttccaaaagccccaacatcctgggaca
ggagaactaaatgcaagggagcttaggaatgcctagggtcaatcaggtgcgtgaagagtc

Exon  8 +      50904      51168   0   Internal    265   100   Excellent
tttcttgaacttgatcaggaagaatgggtgggatctgatgtgggagagaaccgagagctc
aatcggccagccagggccaggtccagcctatctcagagcactcatccttttggacctagg
gatgactaaaatgtgtcctgaccagctacttctcccttaactgccttccccctcccccag
GCTGTGCGGCGGTTTCTGAAGCTGGAGTGTAAGTGCCATGGCGTGAGTGGTTCCTGTACT
CTGCGCACCTGCTGGCGTGCACTCTCAGATTTCCGCCGCACAGGTGATTACCTGCGGCGA
CGCTATGATGGGGCTGTGCAGGTGATGGCCACCCAAGATGGTGCCAACTTCACCGCAGCC
CGCCAAGGCTATCGCCGTGCCACCCGGACTGATCTTGTCTACTTTGACAACTCTCCAGAT
TACTGTGTCTTGGACAAGGCTGCAG
gtgagtaaggaaggcaggcagggacatgcagtcccagttcttagtgcaggcacccctggt
taatcatggtctgttcagtctcaggagttagggaagggggtgctgtgggaggaggcagtt
tcctctccacatgaacacctggtcatgagattgttgcagtccaccaggcccagtgctgcc

Exon  9 +      51809      51899   0    Initial     91    60    Marginal
agaaactagaatttaagctgctccttgaagtgtagggagtatctggatagcttgagagac
gagtgggcaatttcttatcagagagtagtaggtgggaaagcacatgatctgtcccaggga
cagagaacagaccaatctgctgggtaaaggttctctctaagggagattaaagctagaaag
ATGTCCTTGAAAGGCTTTATCCAGTGTGCTGCCATTGAAGATTCTGAAACAGCTGAAAAA
GAAACGAAGAAGAGATCCCTACCAAAGGCAG
gtaaagcagcaaatggttgtttttcagtctgttcgaggtatttgtggtgggattcttgga
ggtgctggaagttgatatggtttttccccaagggaatgaaagttaccatcctggctcaca
tttctggttcagataggttaaactaggaacatgcaatgcagcagaactcttctcctctgg

Exon 10 +      52055      52245   0    Initial    191    53    Marginal
aagaagagatccctaccaaaggcaggtaaagcagcaaatggttgtttttcagtctgttcg
aggtatttgtggtgggattcttggaggtgctggaagttgatatggtttttccccaaggga
atgaaagttaccatcctggctcacatttctggttcagataggttaaactaggaacatgca
ATGCAGCAGAACTCTTCTCCTCTGGTTATTGCTGTGGGGCTCCCAGGCTCTTTTCTACAG
GCTCAGCGTCAGGACTTGGGTGAAGTGGAGCCAAAAAACCTCAGCTATCTTCGGTACTGT
TTGTTTTCACCCATCACTGTCATTCCTGGAAGAGTCAAGTGGCTTGGAGTAAAACTGGGC
ACAGAAAAAGG
gtggggctctacccaattaatgaagaaagtagtctgtatactttgtagggtgctagaaga
aaaaaacttggagcccttctgattttcctagtgatttcctgccactaagtatactttcct
cccacttggtctaattcagagggtcactctctggatacctagaaataattccataacatc

Exon 11 +      54063      54292   1   Terminal    230    65    Marginal
ggactcaaggattccttctgccttggccttccaaaatgctgggatgataggcatgagtga
gccactgtgcccagcccaaaaaagcgattctttttatcttccttctgagaatgtggttaa
gggtatccagggcagctgaagagataactttgttctcactccctctcttccccaacccag
GTTCCCTAGGCACTGCAGGCCGTGTCTGCAGCAAGACATCAAAAGGAACAGACGGTTGTG
AAATCATGTGCTGTGGCCGAGGGTACGACACAACTCGAGTCACCCGTGTTACCCAGTGTG
AGTGCAAATTCCACTGGTGCTGTGCTGTACGGTGCAAGGAATGCAGAAATACTGTGGACG
TCCATACTTGCAAAGCCCCCAAGAAGGCAGAGTGGCTGGACCAAACCTGA
acacacagatacctcactcatccctccaattcaagcctctcaactcaaaagcacaagatc
cttgcatgcacaccttcctccaccctccaccctgggctgctaccgcttctatttaaggat
gtagagagtaatccatagggaccatggtgtcctggctggttccttagccctgggaaggag

Exon 12 +      56067      56182   0   Internal    116    51    Marginal
cactgcagcctcaaattcccaggctcaagcaatcctcccacctcagcctccccattagct
gggactacagggccatgccatcatgcccagctaatttaaacatagttttcagagatggag
ctcactatgttgcccaggctggtcttgaattcttggtctcaagcaatcctcccactgcag
CCTTCCAAAGTGCTGGGCGTACAAGCGCAAGCCACTGTGCCCAGCTGTCAGACGCTGAGT
TTTAATTATGCACCAAACTCCAGCCCGCAGATCCTCTTCACCAAAGCCCCTGGCTG
gtctagcccatcatgacttctctaggaacagtccttctttaggactataaagtattaaca
aaagtctgtagattaaggagcctc
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