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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (42852 bp)
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PERCEVAL Exon Candidates (12 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       3998       4143   0    Initial    146    56    Marginal
tttgctggggcctaaaggatgttaagcagtagggttgccccccacaggcatgagagcagg
ccccaggcccagctaagggtattttgtccaaggagtgttcctgtgaaggctgccctgctc
agaggtttgttgggaacttgaatggaagggtaggaggcgggttggggttggagggggacc
ATGCTCTTTGGTAATTTTAGTCAGAGTCCAACTCAGGGAGGAATAATGAAATGCACCAAA
CTTGATATGCCTGATGACACCATGATCATCTTAGAAGACTGGCCAGGTTCCAAGCAGATG
ACAAGTGACTGTTTTCTAACAAAGAG
gtcagtggcctggttttgcgatgcctgcagtctccagagggtgtccagttaacttgctgg
gagaatggtgtggactcctgctgaccccgcctaacttttgtcattgtggtgtggatgagg
gaagcctggtattgacaagggaattggtagggctaaaaaaaaaaaaaaaaaaaaaaaatt

Exon  2 +       5526       5670   2   Terminal    145    49    Marginal
agataaagatacgaagaaaaactctcgtagctgacacagccacccagcaaaggcacagag
gtgatccagaccactgaggcagagttggaaaaacacacatgtatacatgtgtttgtaaca
cctctccctgtggcttggcagtctgtttactctcctggtctcccatttccatactcttag
ATGCCGTGAACAGATTGTCTTCATCATTGGGGAACCCTCTCCCAGACAGCACTTGGCAGC
CATAGGTTTTCCCTGGAGTTGTGGCATCTGGAACTACAGGGATGAGCATTTGAGTACATA
TTACAGTGAGGTGGCCACACTGTGA
cccgcagttctgcagactggaaggcactgaatgccaggatttttgcagagtgtcactatg
aagtcctgacttggctcagagaccttcttagagcagtaattcgggaccagtggatttctg
ataaagttattctaattttctaataattgttttctaataaaagccatatggcaggtcctg

Exon  3 +       9440       9572   2   Internal    133    96   Excellent
gtgtaccccttgaagtgtggtgaagatgggtgggttttgatgctctgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtatgtagaatttccctaaattcaaaatgatacttacatttt
gataaacccagagagttaattaacatggcataaatgtgctagctcattgttgtttttcag
GGAAAGAACTAGAGAGAGACACAAGTCACCCCGGAATAAAGACGGCAGAGGGTCAGAAAA
GTCTGTCACCATTCAACCTCCCACTGGAGAGCCCCTGTTGGGAAATGATTCTACTCGGAC
AGAGGAAGTTCAG
gtaaggatcaaaggtggtctgtaagcacactgccacttggccaagactcctgtctgtaaa
tgttttccttaggttctcttggatttttgtctttatttttctagcatgctaattagttta
tctatgtcccatggtctcttgttggtctaaggacagcctgtcctgccctttggtagcgtg

Exon  4 +      13460      14071   0   Terminal    612    93   Excellent
aatttcaatgaaaatcgtttgagttaagaagttctaatatttaaagagttaagctttcat
tttctggaagcctttgtgaatagggctgggtagatgcagcgggccctgcatgttcactgc
cctttgtagcttttacaaatgacctgtgtcatgtcatcctcactgtcttctccccaccag
GATGACAACTGGGGAGAGACCACCACGGCCATCACAGGCACCTCGGAGCACAGCATATCC
CAAGAGGACATTGCCAGGATCAGCAAGGACATGGAGGACAGCGTGGGGCTGGATTGCAAA
CGCTACCTGGGCCTCACCGTCGCCTCTTTTCTTGGACTTCTAGTTTTCCTCACCCCTATT
GCCTTCATCCTTTTACCTCCGATCCTGTGGAGGGATGAGCTGGAGCCTTGTGGCACAATT
TGTGAGGGGCTCTTTATCTCCATGGCATTCAAACTCCTCATTCTGCTCATAGGGACCTGG
GCACTTTTTTTCCGCAAGCGGAGAGCTGACATGCCACGGGTGTTTGTGTTTCGTGCCCTT
TTGTTGGTCCTCATCTTTCTCTTTGTGGTTTCCTATTGGCTTTTTTACGGGGTCCGCATT
TTGGACTCTCGGGACCGGAATTACCAGGGCATTGTGCAATATGCAGTCTCCCTTGTGGAT
GCCCTCCTCTTCATCCATTACCTGGCCATCGTCCTGCTGGAGCTCAGGCAGCTGCAGCCC
ATGTTCACGCTGCAGGTGGTCCGCTCCACCGATGGCGAGTCCCGCTTCTACAGCCTGGGA
CACCTGAGGTAA
gaggcaacatccaggaggcagaaaggatggctgatgtcttgctgggagacagctgctctg
tagcacgtgaggggtggtgacagatgccaagagctaggaccagagtctgactcttttctg
gtttggggaggagatgcgagggtggggagggtgtccatgttcattgagtttctggacttc

Exon  5 +      22583      22781   0    Initial    199    43    Marginal
taaaccagacctgtcagtaaacatgagctaattccagtttttgtccctctttgtccttct
caagttccaaggtgatcattgcctgttatctatgggacttgtgtaagctaacttcccaaa
tgcagctgtgagacaaacattttaattaaaaggcagaagggccaggagatataaacactc
ATGTGCCTGGTTGTCAGTGAAGGCGGTGGCGTTCAGCGTCCAGGGGCTAATTATATTCTC
TTCTCTGGGACTCACACAAATATTGCCACAAATGTACCTGACTGTCAGACTGAAGTCATT
TATCTCCAAGTGTGGGGAGCAGTGAAGCCCACACGTCCAGGTAGATTTAGCTCTTACGGA
CTCTTCTGGGAAGCAGCAG
gtgggtaaaactgaaagcatcagctattgcaccctagctgcaggttttcacagaaagctg
aatcaacttgtattggggattctgcattttagagttctctcaaagacctaggtttgggcc
ctaaaatgcagccaccagagcaggcacaccttaaaaagtaggtaatgagtggccttagtg

Exon  6 +      24575      24626   2   Terminal     52    87        Good
atgacgtgacatgtatttggggaattagcatacaagaagtactttgacattttccacgtg
tgaagaaagctgtttttattgacctagctgaagggatcaaattcatatttgaaaagatgt
ggctaaaacttgaaaaggacttgtccatgggggatgtcttcatcccttctccctgctcag
GGAGAAGTTGCAGGCCATAAAGTGTGAGGGCATCAGCCTGGATGAGCTCTAA
agctcaatgttaatttcggattttaataacatgtaagaatacaagtttgattgcagaagc
cacaatcaagttcaagggagggtgaatgaatgggaagtagaagggaccatgtgtacgtct
gtgtgtgtgtgtgcatgtatgcacacatttttttaggctttggttcctttagctataaaa

Exon  7 +      28882      28915   1   Internal     34    96   Excellent
gagattgcgccactgcactccagcctgggtgacagcgggagactgtctcaaaaaaaaaaa
aaaagaagaaaggcatattggattttatcccaaaatgtcacaaccattttatttaagttg
tgcacttgagttttgtgtttatttagttacttggaaattctcattccctaatactgccag
GTATGCTGGGCATCAAACAGACCATCCTCTGTAG
gtgagagcatgcacactcttggaggcgtttatcaacttcaccctgagatctcttcagctc
cagcattggcttctcagcctgtggggctggccaagcccacggcaggctctgagtcatcct
gttgcttctctgagagggcagagccagagggagtgcaggacgcctgcactttccccttgt

Exon  8 +      32163      32300   2   Internal    138   100   Excellent
ttagtttcagctttaagttctcatcctggagaccagaagtgtggtggaacccagtggact
tctgtatgagattatctttgatgttgtgttcctttacctgactccaaaagaggatttttc
gtttaggacctgcttcttcagtgaaaaagctttgcattaattttgttctttttttctcag
TATCCAGCGAGCAGCATTGGTGGTCCTAGAAAATTACTACAAAGATTTCACCATCTATAA
CCCAAACCTCCTAACAGCCTCCAAATTCCGAGCAGCCAAGCATATGGCCGGGCTGAAAGT
CTACAATGTAGATGGTAT
gtgccttgaaagggtgtccgtggtgctcacaggggcacagttgggtgactatttaagatt
catggtacgtttggttcgacttcttctctgggcctacctttatggtacattcttgtttca
gaacaatttctcttttttatgtaggcagacacatgtttagaggaatgttgatttaccatc

Exon  9 +      33750      33875   2   Internal    126    89        Good
tgaatgtggagccggggcacagttcaccctcctgggaagtgacctttaggatttgtgtgt
gtgtgttccatagggggtgggtagacaacactgacagattgggtactagttttctgctct
gtttcccaccctcgtggtattaacactattctttcactgtcctttccccaaaggccccag
TAACAATGCCACTGGCCAGTCCCGGGCCATGATTGCTGCAGCTGCTCGGCGCAGGGACTC
AAGCCACAACGAGTTGTATTATGAAGAGGCCGAACATGAACGGCGAGTAAAGAAGCGGAA
AGCAAG
gtatactgccctcctgatgccagtaccctcttacagacttttaaatttttattttattta
tttatttatttatttatttagagacagaatctcactctgttgcccaggctggagtgcagt
ggcaagatcttggctcactgtcacctctgcctcccaggttccagtgattctcatgcctca

Exon 10 +      35092      35326   2   Internal    235   100   Excellent
gcctttctttctcccttcctccctctccactctctgagggacagctaaggatgcaagcag
cgtgattgggccttgggtatgttggcaggttgggccgcagcagggtagacaagcgtcatt
ctgttctcacaccctgtggcaggcaccatcctgattacttagtgttgcatcaccttctag
GCTGGTGGTTGCAGTGGAAGAGGCCTTCATCCACATTCAGCGTCTCCAGGCTGAGGAGCA
GCAGAAAGCCCCAGGGGAGGTGATGGACCCTAGGGAGGCCGCCCAGGCCATTTTCCCCTC
CATGGCCAGGGCTCTCCAGAAGTACCTGCGCATCACCCGGCAGCAGAACTACCACAGCAT
GGAGAGCATCCTGCAGCACCTGGCCTTCTGCATCACCAACGGCATGACCCCCAAG
gtgcgctgctccgggcgggctctgccaccgtcatcctggcttgtcactgagcttggccag
ttgaattatagcgtgttactagaagtgataaaatcgaaaggcatctctaaaactcaagta
ataagaattagtgattctcacttattttatgttatgttagtacaattgtttttttaaatg

Exon 11 +      40918      41145   0   Internal    228    87        Good
ccccagtaatgactcagttgtgagggtctgatgggaattgagtgtgatgagctgggctct
ggtctaagctggtttatttggaaaaagttctttatagatgtgagagtggatagccgcctg
gcagtactgcccttaaaacaggctgtttcttccctaatggcctttctcctctgcttccag
GCCTTCCTAGAACGGTACCTCAGTGCGGGCCCCACCCTGCAATATGACAAGGACCGCTGG
CTCTCTACACAGTGGAGGCTTGTCAGTGATGAGGCTGTGACTAATGGATTACGGGATGGA
ATTGTGTTCGTCCTTAAGTGCTTGGACTTCAGCCTCGTAGTCAATGTGAAGAAAATTCCA
TTCATCATACTCTCTGAAGAGTTCATAGACCCCAAATCTCACAAATTT
gtccttcgcttacagtctgagacatccgtttaaaagttctatatttgtggctttattaaa
aaaaaaagaaaaatatatagagagatatatatctatgccagaggggtgtcttttttaaaa
attcttcttcattgctgactgaaactggcagatgattgaccagtatcctttgaccatctg

Exon 12 +      41582      41764   0   Terminal    183    69    Marginal
acttctcaagaagccattccttggagcttctgttacagctgtaaaccaaagtggagctgg
tgcttcttgggagcctcgccttacaactaattcctgcctttcgtccagtaccaagtcccc
cgttgcttctggtcagcccacttgtagacttccaggggacacatctttattctgtttcag
GAAACCAGTCACGACACGTCCACATATGTATTTGTGTATGTTAATGTCCAGTATCACATC
ACCCATGAAAGTCGTGGGCAGTTCAGGAGATACCTGCCTTCATCTTTGTTCTTTGTTGCC
TTAGGTTCTTCAGAGAAAGATCACAACAAAAAATGTACACTGTCGTTTACAGCTATTAAG
TGA
tttgattttgtttttttcccaaagagaaaacctacctgccctgtttctgatcccacccct
ctgctggcttgaagcaggtaaccctttcccagccctgcagctgcccacctggcctccatg
ccatcctgcccccacctggctggcagccctggctctccatgtgtgccctccggctctgtg

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