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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (83127 bp)
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PERCEVAL Exon Candidates (21 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +      10713      10864   2   Internal    152    57    Marginal
tttattttttttaattagctgggtgtggtggtgcccacctgtctcccagctactcgggag
gctgaggtggcaggatcccttgaagcccaggagttgaggctgcgatgaactatgatggtg
ccactgcactctagcctgggtgacagagtgagaccctgtctcaaaaaaaaaaagaactag
TTCACACCCATGTTTCCTCCTGCTGCCCCAAATTGCCACTCTCCTGGAGCAGCCCCTGAA
GGTGGAGACCAGGCACCTGCTGGAGCAGGAACTCTTCCTTCACCGGCTTCTGTTGGGGCC
CCAGGATCCTGCAGCTGTGGCATCCACAGGGA
gtaaggccagccacggaggtcctttcatgtcaccaagctgcaggggaggaaaagtgacat
cagacagatcaacaggagaaaacccattttaatgatatgtccacgaatgggagtcccaca
cggagatgaaactgggggaaggggccagatggcggaggcgtctgcgtcatcctcagctgc

Exon  2 +      13208      13293   0    Initial     86    62    Marginal
gggggtggcacctggggaaggctgggctgagggggcaggctgcccctcctgcaggagagg
tgcagtatttcactgggtcctttggaaagggcagggaagctcctgctcgcccgtactgca
ccatttcctgtgatcttagcaatgacttcctggctccattttctccaccagtccgaatac
ATGAGCCAGACCCGCAGCTTTCTCTTCCACAGCCTCCTGGCCTCCGGGTCCACCTGGGTG
GTGCCCACCCGCCAGACTGGGGCCTG
gtggttgtaggggacggggagcagccttgcttcagtgtgggtcattcctgactgtgagat
ggttggggggcaggggttgtagagtctgtgggaggcctcggctgggcctcagagaggggt
atctcttctgcagaaaacccagccacccttaccagatgcggtcaggctacaaagggaaga

Exon  3 +      15277      15364   0   Internal     88    54    Marginal
catgccctcaggaactcactgatgcacacagagggacctgctggcaaatactgaagagct
gtggggagaaaggaaggggtctgacagtgaaggtgggtgcgtgggcggggggcttttaat
ggtccctctgctggctccctccccaccacctcctgcccacctccctggccttggctgcag
GCTAGGGTGCCCTTTGACCTCAAAGAGGCCTGTCCTGTGTGTCTCACTGAGCAGGAACAA
ACCGTCCCAGAAGCCCTTCAGCTCGGAA
gtgagtaagcattggcggtggggatggtgctctgagcagacgcgactcagtgccatgcgg
gcgtctctcccagggcggctttcagactgacccccaaacagagggctcagaaaagatgtt
tttcaatgagggacatttatggttggcaaaaaaaagtggctccccaaaggtcttcacgtc

Exon  4 +      18877      18980   0    Initial    104    46    Marginal
gtctccagcctggcctcctggatgggcatgtggctcggggggcgagaccatgggctcttc
ctggcttgctgtgtcgctctgggtgcgttttacaccactctgaggatctctctgctcatc
cctaaggcagggatgatgatggggccaggggaccacatgggcacaggtaaggcagggatg
ATGATGGGGCCGGGGGACCACATGGGCACAGGCTTCTGGAATGTGGGTGTCGTCTCCCTG
GGGTCCCGCAGTCTGAACTCAAGACTCAAGAGCCCCATGTCCAG
gtggggatgtacaggagccccttagaagtggggaagaaggccaggcgtggtggctcacat
ctgtaatcccagcactctgggaggctgaggcgggtggatcaacagaggtcaggagttcga
gagcaacctggccaacatggtgaaccctgtctctactaaaaatacaaaaattagctgggc

Exon  5 +      27036      27072   0   Internal     37    52    Marginal
aaaggcaaatggttgggaaaattggatttaattgaaaggccattttattagaattgactt
atttttctcgccactgggatccttgcctgaaaggcggctgtgggcagagggcacatactc
cccctgccccagcgcagcgtccctgcacccccaacagagcttcctgttcctcatgcccag
TACTCCCAGATGCCTGCGGAGCCAGTCATCAGCTCAG
gtgtgtgaggccggttgggggagcccctgcctggcgcctgtgcctgtgagcagtgttcct
gtggggccctgggaccaatgctaccagcgttggcgttttcccaggaagttgggaatcagg
catctcgtggcttccggttcaagttcctccgtgtgctttaagtctgggcaggtttccggg

Exon  6 +      30914      31066   2   Internal    153    93   Excellent
gatccaggcccgccacctccaaggcagagctgcccacctggccttcggtttccagccgcg
gggaacagggtggacgaaatgacagtggagagggcacagggagggcaaggcgggggcacc
tgctccagggatgccccaggcaggcccacttgcctgccgcccccaccgaggctgtcacag
GAGGACAGAGCACGAGTTCCCAGGGTGCTCAGGTGTCATTCCTTCCTTCCTGCAGAGCGA
GCTGCCCTCGGAGGCCGGCGTGGGGAAGATGGCCCAGTCCACCGCCACCTCCCCTGATGG
GGGCACCACGTTTGAGCACCTCTGGAGCTCTCT
gtgagtgcgcttggctggccagagctgggggcccccctgggaggcactctgggctagcct
cagccaccttcgctgggctaactgggccagagcaggaggggtggccccgggaggactctg
ggctagccccagccaccctcactgagactttgggctaaacttggcaaccctcactgggat

Exon  7 +      31696      31820   2   Internal    125   100   Excellent
actcacagcagccctggaatggcaggtggaggacagagatgggatgagagggaatgggaa
gggcaggagacgtaggcctcaccaggagtctcaggctagccttgagctctgggcctggga
ggtattggggtgacacccaaactggggactgacgcttctattttcctctccctgccccag
GGAACCAGACAGCACCTACTTCGACCTTCCCCAGTCAAGCCGGGGGAATAATGAGGTGGT
GGGCGGAACGGATTCCAGCATGGACGTCTTCCACCTGGAGGGCATGACTACATCTGTCAT
GGTGA
gtgggggggctgccctctgcaagaggactggagtggggacaacaaatgtggcctgtcctg
tcttgggagcctggcagaaccaggagatagcctcttggttgtacagcttcccctgtgggt
ttctgaggacacttcaaattgcaaaggagaaaatgtatcagctcatgtaactgtcaatcc

Exon  8 +      38912      38960   1   Internal     49    49    Marginal
ttcctgggggcttggccagtgccagggtgggctccaaacgcacggctctgggctcttgga
ctcacccctgctttgggcaggcagtggaaggcaggccccacaagagctgctcactcccgt
cacctgtctccctcgggggtctagggtcgaacctcctgtgagcccctcctctccatgcag
CCCTTGGACTGGTCCTGGCGGACCACCGAGTTCCCCGCGCAGGGGGCAG
gtgcgccccacctgggtgccaagggaggcgacaccatctctcccccttggggtggcccag
ccttgcctaccatgatctccagggccggggctcagccctcatgcctgggaacagaggctg
ctttacggggtgagggcctggggccccccgagccttccccaggcaggcagcatctcggaa

Exon  9 +      45331      45407   0    Initial     77    45    Marginal
gcactgggcactacgacatccgagacaccaagcagagggggagatgcagaggggcagcct
gggaggccaggaggcacgagaggctggctgggagaacagaaaagggactggggcttggca
acccagaggctgctgagttcccacggtttggagagggcagggcccaactgggaatggctc
ATGGGATTGCTGAGCATGGCCAAGGGAGCCCTCAGCATCCTCTCCAGGCCTTGTGTCATG
AAAGACCCCGAGCAGCG
gtggggctcaagccatgtggggccaggggagggaccagttgtcctaactggagatccagg
gatcagaggagccaccccactcacccgcctgctgtgcctagtgcacgcccgcctccggcc
cccctgccaccctcggccagctgctatttctgtctcctttgttctgtcccccattggacc

Exon 10 +      55912      55999   2   Internal     88    83        Good
caccctgcactcagggcccacttgtgcccagcccacctcccccactgcctggctccctgg
ggctggatctccccactttgagctgtgaggtccagaccccgatgccgcccggagggtaca
gtgaagcccgtgtgggcatcagggcctgggagcctcccccacccgacgcctcccctccag
GTGTGCAGAGAGTCTATTCCGCCTCATCAACGGCTGGGTGGATCCCCAGAAACCCTGGCA
CCGGGAGGCTGATGGAGGGGAGGGCGAG
gtgaatatgtcagtttatcccaatgcaagtagtggcctgttgggatgggggagagacccg
gggaaatatttgggatgactggagccgctggccctttaaggctcctgtaacaggacacct
cctagacgggacaggacgactgactgtgtgtgtttccccctccctcctcccctttcccgc

Exon 11 +      56185      56427   0   Internal    243   100   Excellent
tatgtcagtttatcccaatgcaagtagtggcctgttgggatgggggagagacccggggaa
atatttgggatgactggagccgctggccctttaaggctcctgtaacaggacacctcctag
acgggacaggacgactgactgtgtgtgtttccccctccctcctcccctttcccgcgccag
GCCCAGTTCAATCTGCTGAGCAGCACCATGGACCAGATGAGCAGCCGCGCGGCCTCGGCC
AGCCCCTACACCCCAGAGCACGCCGCCAGCGTGCCCACCCACTCGCCCTACGCACAACCC
AGCTCCACCTTCGACACCATGTCGCCGGCGCCTGTCATCCCCTCCAACACCGACTACCCC
GGACCCCACCACTTTGAGGTCACTTTCCAGCAGTCCAGCACGGCCAAGTCAGCCACCTGG
ACG
gtgagttcccctagtccctgagggctgcgggctgcgggctgcgggctggagaggaggtgg
ctgcgttccccgcacctcaagaggtctgagctcgccccactgtctgctcggggttcccac
ctggcccgggccaggaggagcatcgggcaggaggcgggtctcagggccgggcagtctggg

Exon 12 +      66433      66523   1   Internal     91    66    Marginal
cctcctgcccgttttccacagggccaagcccaggcctgaagcctagaggcctgctgggga
gacaggaggaaggagctgggggagcgctggagccgtcctgggctcagccaccctctagaa
ggacctggatctctcagggctcccttccctcctgtggccacctgtgtcacccacccccag
ATGCTGCCAGGGCAGGGGACATCACAGACATCCTCCCCGAGGCCACCCAGCTCCGGCCCG
GCTGGGCACCTGGGGTCCAGTTAGTGCCAGG
gtgaggtctgccaggcatgtatgccccaaaggccatgtgagcactgcactggggacacct
gtggggaggagagccaggcccaggaccttggtggccttactggccagaggggaggagaag
tgctcacatcgcctgaggacaggggcctccttgctctccaccctgaggcctgggcctccc

Exon 13 +      70657      70843   0   Internal    187   100   Excellent
ttcacgcctcaaaggacagacacctggagggattcagcagaggggctgcttggggcagtc
ttcatctgggggttgtggaaggggcacccatggggaggacgtggctcccaatggggggtg
gcctggacaggggtgcagttgggaccactggtctcacccgctccctctcccccactccag
TACTCCCCGCTCTTGAAGAAACTCTACTGCCAGATCGCCAAGACATGCCCCATCCAGATC
AAGGTGTCCACCCCGCCACCCCCAGGCACCGCCATCCGGGCCATGCCTGTTTACAAGAAA
GCGGAGCACGTGACCGACGTCGTGAAACGCTGCCCCAACCACGAGCTCGGGAGGGACTTC
AACGAAG
gtgagggcccccagctcctctgcccacggtggcactttgcccagcatcccggacagcaca
gccgggggctgcctaactgggagagagtggggctgacagcatgggcttagccattcccct
gcggagggctttcagtgcctccaccagcccccattttcccagttctgagtgggacctggg

Exon 14 +      71990      72105   1   Internal    116    97   Excellent
tctgcacctgacatggggctgggcacttctttgaacctggcacggggctgggtacctctc
tgcacctgacatggggctgggcaccctttgaacccggcacagggctgggcacctctctgc
acctagcacaggggtgggcacctctatgcacctctctgaagtgtcgacccctcccggcag
GACAGTCTGCTCCAGCCAGCCACCTCATCCGCGTGGAAGGCAATAATCTCTCGCAGTATG
TGGATGACCCTGTCACCGGCAGGCAGAGCGTCGTGGTGCCCTATGAGCCACCACAG
gtaggccaggagccaggctgtgcccagggccctgcagtcagctgtacgggtcgggggagg
ggtcccctgaggcagcccctgtccctcctcagttggctgatctgcctgcctgtcctgtcg
gcatctgtccagggctccctgctctgtgataagtctgtgtcggcggctccttcctcaccc

Exon 15 +      75751      75860   0   Internal    110   100   Excellent
atggggtgggttggtggatggatgaatgagtggacagatatacaaatggcaacaactata
gagcagggcatccccctgcctacgtggagccaggaccagacatggagctgggggctgcca
ccttagtggattggggctgcgtgctgatgctagcccctctccctgctcccccatgtgcag
GTGGGGACGGAATTCACCACCATCCTGTACAACTTCATGTGTAACAGCAGCTGTGTAGGG
GGCATGAACCGGCGGCCCATCCTCATCATCATCACCCTGGAGATGCGGGA
gtgagtcccgggcacacggggtggaggtgggacagggctgggcaggcacggccgggggag
aaggggagctgtcatggagacctgcaggccaaggctagcttggggaagagactttggggt
gtgctgctggaggaaggaaccgccccctggcctgcagggcctgcctgggcacaagctggg

Exon 16 +      76264      76406   2   Internal    143    93   Excellent
cctcacagctttgagcctctgactccctctagcgggaacactcgctgccggcactgggtg
ctctgtggtgaccgagggctctcaaggccggtcctgcagggtccgaggtgggtggggaag
gtgggcaggttgagggtgggcagggttgagctcacaattctggctgtgcccacccgacag
TGGGCAGGTGCTGGGCCGCCGGTCCTTTGAGGGCCGCATCTGCGCCTGTCCTGGCCGCGA
CCGAAAAGCTGATGAGGACCACTACCGGGAGCAGCAGGCCCTGAACGAGAGCTCCGCCAA
GAACGGGGCCGCCAGCAAGCGTG
gtgagcggccggccaggggaactggacgcgtgtgggaggagaaggggacacattggcagg
acacaatgtgagcccgcgtcccagggacagggccagtccctgaacggccccccacgccca
gactcctccctgacggagcctgagagcagcccccatataagtcgcttgtcctgggccaag

Exon 17 +      76765      76853   1   Internal     89    92   Excellent
agggcacctcagaggcctgggtggcaccgcaggtttgcccgtccctgtgggttgctcacc
accggacccacctggagaatcgattggccccaagggtggggcaggtctccctcctcccgg
aaggaggcctcaccctctggtcctgcctgctcaccccgcctgccctgcctggccttccag
CCTTCAAGCAGAGCCCCCCTGCCGTCCCCGCCCTTGGTGCCGGTGTGAAGAAGCGGCGGC
ATGGAGACGAGGACACGTACTACCTTCAG
gtgagtgtgtgctcctgcacggcagccgggagacctgcctcacctctgtcgtctgctgag
cccaggctgggccatggggagggactctggagaccatggtggagggggcgggaggagccc
agccctgtgtgagagggtccagagggcagaacctgcttgcaagagccagaccagcaggac

Exon 18 +      77963      78084   0   Internal    122    98   Excellent
ggttagacctgcttcttgggaagaggaaagaagatcaggggatcctgagcctctggggtg
ctggggaacccccagaaaggacagatgctttgccaagcccaggtcctcctgaggctgcgg
ccacccccctcccgtgggggtctggggcacgtgggcagagatctgctcctctgtgctcag
GTGCGAGGCCGGGAGAACTTTGAGATCCTGATGAAGCTGAAAGAGAGCCTGGAGCTGATG
GAGTTGGTGCCGCAGCCACTGGTGGACTCCTATCGGCAGCAGCAGCAGCTCCTACAGAGG
CC
gtgagtcagccctagcccaccatcagtgtggggaaggaggacatggcttaaccccccagg
agaaggccaggaggaccagaaacccctccagaaggcatcatctgccagggacaggcagca
gggtccagagcagagcccaccccacatctcctcctccaggaagccttctagcacttgggg

Exon 19 +      78636      78784   2   Internal    149    96   Excellent
cgcaggcccagtggccgtgcatggccatggttggggacagggaggctgggggaggatgaa
gccactctctgacatcagaggctccacccattcgcagcatgggggcatcacgggcatggg
tggtcggtgggcacgaggctgccttgcttcccacccatgcgagccgttgcttctgagcag
GAGTCACCTACAGCCCCCGTCCTACGGGCCGGTCCTCTCGCCCATGAACAAGGTGCACGG
GGGCATGAACAAGCTGCCCTCCGTCAACCAGCTGGTGGGCCAGCCTCCCCCGCACAGTTC
GGCAGCTACACCCAACCTGGGGCCCGTGG
gtgagtcccttgggcagtgcgggcccacgggcagggcggggaggcccactgggggcgcct
agctcaggacacaccacccagctcgggacccagggcaggtgtctctgtggctggctcctt
ccagcggttccaccctctgggcaggaggcgcagccacggatagccctctctgcccactcc

Exon 20 +      79563      79701   1   Internal    139    81        Good
acagggccccaggtgttcagcccttgctcaagcctctagctggcaggggtgatgcccagc
gtcacatcgccaggccttgggatggctccctggtgtccagaggtgtctggagcctgggtg
gaggctgcacctggatgcccagcctggctgccctgatggccccacctgcctctcacccag
GCCCCGGGATGCTCAACAACCATGGCCACGCAGTGCCAGCCAACGGCGAGATGAGCAGCA
GCCACAGCGCCCAGTCCATGGTCTCGGGGTCCCACTGCACTCCGCCACCCCCCTACCACG
CCGACCCCAGCCTCGTCAG
gtgcgtgggctgccgagggcctgagcatgtgctgtcaccctgtctgttcacctctgtcct
tctggccatgtcagctgccctgccccaccctgtgtgctcaccactcgcaaccctggatca
gacaggcgggcgggggcagtcaggccaggagcatctgcagatgctggggaaatggtccac

Exon 21 +      81383      81715   0   Terminal    333    97   Excellent
caggccccgcacaggccaggagtgactctggtgggctctccccctcccccgtctcctgcc
tactctggttgggggtgtaggggccagggtgtggtgtggccagacctccaggcccagggc
gaccccccctgctctccctgctccactgccccctgcccctaatgcgccggcctctcgcag
GACCTGGGGGCCCTGAAGATCCCCGAGCAGTACCGCATGACCATCTGGCGGGGCCTGCAG
GACCTGAAGCAGGGCCACGACTACAGCACCGCGCAGCAGCTGCTCCGCTCTAGCAACGCG
GCCACCATCTCCATCGGCGGCTCAGGGGAACTGCAGCGCCAGCGGGTCATGGAGGCCGTG
CACTTCCGCGTGCGCCACACCATCACCATCCCCAACCGCGGCGGCCCAGGCGGCGGCCCT
GACGAGTGGGCGGACTTCGGCTTCGACCTGCCCGACTGCAAGGCCCGCAAGCAGCCCATC
AAGGAGGAGTTCACGGAGGCCGAGATCCACTGA
gggcctcgcctggctgcagcctgcgccaccgcccagagacccaagctgcctcccctctcc
ttcctgtgtgtccaaaactgcctcaggaggcaggaccttcgggctgtgcccggggaaagg
caaggtccggcccatccccaggcacctcacaggccccaggaaaggcccagccaccgaagc

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