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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (44616 bp)
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PERCEVAL Exon Candidates (12 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1290       1371   0    Initial     82    69    Marginal
aggcgtgtccaaggccggctggccccgccccgccccgccgcctggcctctggcccgctgg
ggcgcgggctttcgctttcagtcgagggctagcgagcgcagcggagcctggagagaaggc
gctgggctgcgagggcgcgagggcgcgagggcagggggcaaccggaccccgcccgcaccc
ATGGCGCCCGTCGCCGTCTGGGCCGCGCTGGCCGTCGGACTGGAGCTCTGGGCTGCGGCG
CACGCCTTGCCCGCCCAGGTGG
gtgactcgcgcggcccacgggggacagccgccccgcatgtccacccggctggtgcgcagc
cttcgggtgcccgggccgcgctctcccggggcgctgtcacgggctgggaggctgggagtc
ccagtcgccgccccccatccgcatcagacacgcgcgcctctggggacccgctggggactc

Exon  2 +       8064       8467   1   Terminal    404    55    Marginal
ccctttgtcgctggtaatgggtgcaggctgctctgacccggttctgagtcctgccccctt
ccaggcctagggctttgggccttgatcacctctgctgagtagctgactgcggggctgggg
ctctgatgctcaggacccacctctctgggacccacagtctttttccactgtggcgtgtag
TGATGTCACAGGTGGCAGTGATGTCACTGTGGTTTGAGGTACTTGGCTGTGAGCCCCGGA
GGAGGAAGTGTCTGTTCGCTGATGGGGGGTTGGAAGAGATCATTGACTTCTGCCCCAAGC
GTGAGCCCCAAGTGTGCAGGGGGGAGTGCGGGGGGAGGGCTGTTGGCGGCGCATCCCAGG
GCTCTGGCTCTGCCCTTGCATCTAGCCTGTCTTTCCTGTGGGCTGTGACAAGCCACTCTG
CATCTCTGAGACTCCATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
CCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCT
CCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTTCTTCTGA
tggagtctgactccgttgcccaggctggagtgcagtggcgtgatcttggctcactgcaac
ctctgcctcccaggttcaagctattctccagcctcaaccttccaagtaactgggattaca
ggcatgcaccaccacacccggctagtttttgtatttttagtagagatggggtttcaccat

Exon  3 +      12239      12280   0    Initial     42    43    Marginal
gatgcattaactacacagagtgcccttccttgtcacagctacctgggggcaggggaacat
catccccattttacagaagaggcctttgaagcacagagattaactgacgtacttagggtt
ttgcagctcactagaggcagagccaagactccaccccaggtggccaggctcctgagcgct
ATGCCTACCTCACCCTCCAATGAGGTGGTGGTGGAGGAGACC
gtgagccgctgtcacctgaacactggtgcactcagtctgctgctctgaggacgccgcccc
ctctctttgtaagtccatttcctgcccatttctcatgctagctccagctcatttcaacta
attgaaaattaaaactttgcttctgttgagcaattcggcatcgatgagacgccagctgtg

Exon  4 +      20980      21073   1   Internal     94   100   Excellent
atttgaaaccagttctttctgactccctgtatccttatctatggagaggccccatgactc
gttcactaaaggttatggatctcgatcttgtactggccacatgactgcagctggcagtac
agtggggagtgcgccagccctggctctgacctcctagaactgccctttgttcatttccag
GTGACGCATCTGTGGGGGCCCCTGAAGGACTTGGGGTGTGTGTGTACACCCTCTTTGCTT
GTACAGATGTGTTCACACCCATGTTTGCCTACAT
gtgaatgtctccattctgagcttgctctcagcctggtagaggtggctaattaatgcttgt
ccctgaaagcccggactgccaaccccagtctttcaggagagagggcaggactcaggggct
tgctcccgggggtcctgggaaggcacaatggtgacagtgctgcagctctgcactcctgga

Exon  5 +      25155      25283   1   Internal    129    96   Excellent
cagaaatgacgtgatagctggtacaatactagatgggagatgattctgaggaattggaac
tccacagaatagccttcccagctgggctttagaactctggactttgtggggacagtggat
gagcccagggtcctggcagaaggctcgcccagctgagacctctggcccttgtttcctcag
GCCAACATGCAAAAGTCTTCTGTACCAAGACCTCGGACACCGTGTGTGACTCCTGTGAGG
ACAGCACATACACCCAGCTCTGGAACTGGGTTCCCGAGTGCTTGAGCTGTGGCTCCCGCT
GTAGCTCTG
gtgagtaggttcagagaaaaagggggcccttacacccctgcctccaacttcccccggcaa
ctccagcctctttggcttccagctgtctggagttaccccaggctggttgttggaagtggc
acaggtgcagctgtttacccctaccactggcattttcctcctctgtctcaccaaagcctc

Exon  6 +      25972      26128   1   Internal    157    69    Marginal
gagagtagcaggactgccggtcctgcccctggactctggccggtgttgtgtgtgccccat
gctgaggcggtccgccagcctcctggagatccgctgtctgagagtgctgggctgtctggg
agggcagcgtgggtgtggcggaggcaggcgtgaccgtttgccgccctctcgctgctctag
ACCAGGTGGAAACTCAAGCCTGCACTCGGGAACAGAACCGCATCTGCACCTGCAGGCCCG
GCTGGTACTGCGCGCTGAGCAAGCAGGAGGGGTGCCGGCTGTGCGCGCCGCTGCGCAAGT
GCCGCCCGGGCTTCGGCGTGGCCAGACCAGGTACGGG
gtggggctcaggtccttggggacgcccatgggcctctcctttgtagacatccttgcagtg
tcacgggcatcaacccattaattagtccagcagggagcactgttagtggtggccaggtgc
ctgctacccatccgtctgtccacctgtccaccgttcattcttcctgccagcactcccgat

Exon  7 +      27061      27131   2   Internal     71    61    Marginal
cctggaaggcaggactgggtgggtgcatggggaggtgggggagggctaggagggggtggt
cctcagagagggcacacatcgtcactctcctatcctgcctgctggggcccgtgaatgagc
ccagccaccccagccactctgtcccctgctgcctcctgaccaagcctcctcctcctccag
CTGTAACGTGGTGGCCATCCCTGGGAATGCAAGCATGGATGCAGTCTGCACGTCCACGTC
CCCCACCCGGA
gtatggccccaggggcagtacacttaccccagccagtgtccacacgatcccaacacacgc
agccaactccagaacccagcactgctccaagcacctccttcctgctcccaatgggcccca
gccccccagctgaagggagcactggcgacttcgctcttccagttggtaagtcgcaagaag

Exon  8 +      28153      28230   1   Internal     78   100   Excellent
ttaggctgaatgaggcacacagacatgattgctttgtaattggatttgagaatctccggc
ctagactcgcccctcatttgcaatgacccgaagcaccttgggtccctggcttgcctggct
ggcccctggtacatttgagtttgttttctgtagctgtctgagcttctcttttctttctag
GACTGATTGTGGGTGTGACAGCCTTGGGTCTACTAATAATAGGAGTGGTGAACTGTGTCA
TCATGACCCAGGTGAAAA
gtaagagtccatccttccttccttcatccacttgttcaggaagcttttgtggggtgcctc
ctgtgagtccagcactgggcacagccttaggggtcagacagagctggatatgggggtcct
tgttctgtaggagcttaaggcctggggtgaaggtacctctgctaacttaattactaaaag

Exon  9 +      36076      36369   1   Internal    294    61    Marginal
atttggtgaacagggccaggtattctctgccctcataggacactctagtagagcagctgg
gtgctaataacagaaacacagaaaccacggagaatcacacctcccaaaaagtgccgtgtg
tggaaagaacgtgcaagggtgggcagaaacgtcacgtaaactgagaagtgctgatggcag
GAGGTGTGGATGGCAGTGGGAAGGAAGAGGGGAAGAAAGAGCTGGCTGGTGGGCTGACTG
CTCTCCCCTACCACCCCCTGCCCATCCAGCCTCACTTGCCTGCCGATAAGGCCCGGGGTA
CACAGGGCCCCGAGCAGCAGCACCTGCTGATCACAGCGCCGAGCTCCAGCAGCAGCTCCC
TGGAGAGCTCGGCCAGTGCGTTGGACAGAAGGGCGCCCACTCGGAACCAGCCACAGGCAC
CAGGCGTGGAGGCCAGTGGGGCCGGGGAGGCCCGGGCCAGCACCGGGAGCTCAG
gtaagaggtgggagcacacctggcttcttcccaagcctccttggtctttctcacctggtt
tctgtcttagccatctcctcctgagcctccccgcagggtgggacgaggcctgagccacag
ggaacttccttcggttcgctgaacctaagttccctcccgcctttgcccatgctgggccta

Exon 10 +      36809      36941   2   Terminal    133    75        Good
accttctccctgctaccacccccagctggcctggctgctcctccgggctcaccatgccct
ggcctccctttcacaggactgtcagactgcatgtacagacattgtcttctcctgtctccc
acgccaggctgtgggacacctggtgagcctggatcatctcattcatccctgtatctgcag
GCCCAACACGGCCCAGCTACTGATAATTAATCATAACAATCGCTTCTACTTATGGAAGGC
TACGGAACAGCAGGCACTGTACTGGGCACTTTACATGCATAAAACTGACCTGCATGTCAA
TGCTAAGAGATAG
ttcctgttgttatcccattttacagatgaggaaactgagccccagagaggttaaacagct
tcttcaagggcacatggctagtaaacagaagagccagactcacccctaggctgtcgggct
ccagagccctgggattggaagatgaatgaagaaatggtggctccagggctccactcactg

Exon 11 +      40876      41218   2   Terminal    343    66    Marginal
ctctggggtgattggggctgggtaggtagtgatgctattcttattcggcagaggggaaaa
tgaggcacatgcaggttaagtgacttgctcaaggtcacacagcagagctgggctagaatc
ttggtctcggctcctggcccagtgctctttcccatgtgtctgaatctgcatcttgggcag
GGGTCCCTGGGCCCCACTCCTGGACCCCCGGACTGACCCCCACCCCATCTTGTGCTTAGC
AGATTCTTCCCCTGGTGGCCATGGGACCCAGGTCAATGTCACCTGCATCGTGAACGTCTG
TAGCAGCTCTGACCACAGCTCACAGTGCTCCTCCCAAGCCAGCTCCACAATGGGAGACAC
AGATTCCAGCCCCTCGGAGTCCCCGAAGGACGAGCAGGTCCCCTTCTCCAAGGAGGAATG
TGCCTTTCGGTCACAGCTGGAGACGCCAGAGACCCTGCTGGGGAGCACCGAAGAGAAGCC
CCTGCCCCTTGGAGTGCCTGATGCTGGGATGAAGCCCAGTTAA
ccaggccggtgtgggctgtgtcgtagccaaggtgggctgagccctggcaggatgaccctg
cgaaggggccctggtccttccaggcccccaccactaggactctgaggctctttctgggcc
aagttcctctagtgccctccacagccgcagcctccctctgacctgcaggccaagagcaga

Exon 12 +      41387      41505   1   Terminal    119    72        Good
aagcccagttaaccaggccggtgtgggctgtgtcgtagccaaggtgggctgagccctggc
aggatgaccctgcgaaggggccctggtccttccaggcccccaccactaggactctgaggc
tctttctgggccaagttcctctagtgccctccacagccgcagcctccctctgacctgcag
GCCAAGAGCAGAGGCAGCGAGTTGTGGAAAGCCTCTGCTGCCATGGCGTGTCCCTCTCGG
AAGGCTGGCTGGGCATGGACGTTCGGGGCATGCTGGGGCAAGTCCCTGACTCTCTGTGA
cctgccccgcccagctgcacctgccagcctggcttctggagcccttgggttttttgtttg
tttgtttgtttgtttgtttgtttctccccctgggctctgccccagctctggcttccagaa
aaccccagcatccttttctgcagaggggctttctggagaggagggatgctgcctgagtca

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