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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (53431 bp)
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PERCEVAL Exon Candidates (11 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1258       1354   0    Initial     97    95   Excellent
acgcgtgcgcgccgcgtgagggcggggctagtgcgcacgcagccttagctccttccccgc
ccttgctcttcccagtttctccgtcagcctgcgggtcccggctggcggctgcttccggta
ggagagcggtgtagagcgagcaggtctcagctcctcgtcatgtcatacggtcccttagac
ATGTACCGGAACCCGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGCAGCATCATCCAG
ACGTGCAGCGGCAACATCCAGCGGATCAGCCAAGCCA
gtgagccggggtaccgagctggggggcgggagctgtcccggggacaggcctgggtgaggc
tgccgggacgcagggcccggctggggctacggccgaggccacacctggggctgtctcggg
ctgtccaccctgggggcggtgggctgccatcccccaatctgtcaggcccgggttgcccga

Exon  2 +      12874      12956   1   Terminal     83    77        Good
ttagggtatctgatacctgagtcttgctggaaactttaaagaaaatatcttaatatttag
gaatttagaaagtgttaaggcttagattaattctggtgcttagctagcaaatgaccctat
aatattcccaacacccccacttcctcaacccctccctatctttccaccccccaaatttag
GTCATCCCAACAAAGGAAATCAGAAAAGTCTAGATGAAGAAGAGTTCTCCACTGAGAATA
TGCAGAGAACAGCTGATTATTAA
ttgattttttcatattctataaaattcccatagctctgtagcttatttaataaattttga
tagatgattaataacttgatactttggcatacttctaaagtttctaaggaatgctctact
ttttaaagacactcaataagaaaagacctatttccttgactttttttgtcagatctacgt

Exon  3 +      17491      17560   1   Internal     70    95   Excellent
accttgtaattagtttttggaggaatgtgtgtgtcaaggttttgatcatagcatggtctc
tattagttgcatgtattaatacttattctgaatgggaagagaccaggaatcttagaagta
gggtactcatgatgaatgtatttttcttttaaataaatctttttcttcctatctccccag
CTGCTCAGATAAAGAATTTGATGAGCCAGCTAGGAACTAAGCAGGACTCAAGCAAGCTAC
AGGAAAATCT
gtgagtaacttcctgacaaggttgggttttgtgagggccatttgaggacacagtgtcctt
gccagacagcagcttaggtttcaggtctgggaagtcagaatgagaggcagtgggtcatga
gataagagctggatctaaaagaggggcggggcaacaaagtatattaatggattgtaattt

Exon  4 +      18115      18173   2   Internal     59    71        Good
gccttccatatccataggttctgcacctgtgggttcaaccaaccacagatagaaaatatt
cagaaaaaaaaaggaaggtctctactgaagatgtacagacttttttccttgtcattactg
aaacaatatagtagaacaattatttacatagtatttacattgtattgtgtctggagttag
TTCCTTCTGGTGGGTTCTTGGTCTTGCTGACTTCAACAATGAAGCCGTGGACCTTCGTG
gtgagtgttacagctctttaaggtggtgcggacccaaagagtgagcagcagcaagattta
ctgtgaagagcaaaacaacaaagcttccacagcgtggaagaggatctgagcaggttgctg
ctgctggctggcgtggccagcttttattcccttatttgtccccacccatgtcctgctgat

Exon  5 +      28393      28417   1   Internal     25    81        Good
ttgaggcctttcttggccgcttgagttcttactgattattcctgccctctgaactcctgt
agtaccaattggatatagcagttatttataataactttgttacttgtctgtctatatcct
ttatttacaaatagacagctgtttgaggtcaggggtgagtttttacttctgtgttcatag
AACAGGACAATGCTGTCAGTATGTG
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgttttgttttttc
agacagagtttcactctattgctgaggctggagtacatggcatgatttcaactcactgca
gcctcaaccttccagggtcaaatgatcctcctgccccagcctctgagtagctgatgtgta

Exon  6 +      29607      29753   0   Terminal    147    85        Good
agtattaaccagggacttgagctagcaaagagcaaatttattaatttaaagaagagacta
tttcataataattttcctagttggaaatctttaaggggtataattttacttttaagggaa
attaaaaccaaatgattctgggttaatatgaaatctcaagttcttgcttgatttccttag
CGCCAGCAGAGACTTCAGAAGGAACGCCTCATGAATGACTTCTCTGCAGCCTTAAACAAT
TTCCAGGCTGTGCAGAGAAGGGTATCTGAAAAGGAAAAGGAGAGTATTGCCAGAGCAAGA
GCTGGATCTCGTCTTTCTGTAAGTTGA
ttcccaaaagaagacctttgcaatatcagaatgttcttttccaagtttgtgggttttttt
ctttttctctttgaccaataaacatgtaagttagctgctgtgaaaatggcaggttggtgt
aacctatgtaaaaaacatatatgcatgtgatcaaagcctagaaaggaatctgaatgaagg

Exon  7 +      32881      33077   0    Initial    197    46    Marginal
ctgcactccagcctgggcaacagagtgagactccatctcaaaaaaaaaaaaaggaagaaa
gaactgccagagactgggtaatttactttaatttatattgaagtatttaatttatatagg
aaaggggttttgttgactcacatttccacatgtctgggaggcctcaggaaacttacagtc
ATGGTAGAAGACACCTCTTCACAGGACCGCAGGAGAGAGAATGAGTGCGGAGAGAAGGGG
AAAGCCCCTTATAAAACCATCAGATGTTGTGAGAACTCAGTCACTATCACGAGAACAACA
AGGGGAAAACTGTCCCCATGCTTCAGTTTTGTCCATCTGGTCTCGCCCTTGACACGTGGG
GATTATTACAATTCAAG
gtgagatttgggtggggacacagagccaaaccatatcagaccccaaagaagttttgttta
tatgagtcatatctattgatgtatactgtattagaaattaaaactgagaaaaattttaga
tgtttgtttattcatttacaaataatacacttattacatattaacatgaatataaattag

Exon  8 +      40092      40197   2   Internal    106   100   Excellent
tatcatcagctctttgcttctggatatgaagaatgtggccctccaagactttattgatag
cagaggactggagccctggtaatgtctttgcataggttctgctggcagtagagatgttgg
agatatgtcttgttatgcctttgagaggagaaatcacctagtgtgcctgtttccctgcag
CCATGAGGAGTGGAACCAGATGCAGAGCCAGGAGGATGAGGTGGCCATCACTGAGCAGGA
TTTGGAACTTATTAAAGAAAGAGAAACGGCAATTCGGCAGCTGGAG
gtgagagccacgtcatgttttttgtttgactcagtgtgtctgcaggtatctgaactcctt
agttcactttaattctcttagtgattatgaaaaggcataaaatgtgtcattgtgtgattt
gtattttttctgtctcagtgtaatcatggtgggtttgaactaccggttttttttgttttt

Exon  9 +      45780      45852   0   Internal     73    90   Excellent
gtgccttctgttttacaatattgggtaggcagcaatagattattttctgtttatggagaa
agcatgctttgtagagccttaaaaacacacgtgttaatagctaaaactttaggtacgtga
gggaaacaaatcttctaacatgttgcttaatgttagttaattgttttttgtcttccttag
GCTGACATTTTGGATGTCAATCAGATATTTAAAGATTTGGCCATGATGATCCATGACCAG
GGTGATCTGATTG
gtatgtattattgatacctttaacctcaaggtgagttgatagtatttggcatgcatctgt
aatcccagctactcagaaggctgaggctgaagcaccatctaggagtttgaagccaacctg
ggcaacataatgagaatttgtctcttaaaaaagaaagaaagaaagaaaaaggagttaggc

Exon 10 +      47579      47661   1   Internal     83    95   Excellent
attcattgttttttctccaaagaaaaggctagtctcttaccaaggtagtaactcgatttc
atggctggatagtttggatagtggtagtgaaaccaggacatgtaacatcagaaatctgtt
caatttgcagtcttaaaacatctgagtgtgttaaaacatcctctgtccttccttttgcag
ATAGCATAGAAGCCAATGTGGAAAGCTCAGAGGTGCACGTCGAAAGAGCCACTGAACAGT
TACAGCGAGCTGCTTACTATCAG
gtaaaagcgggtaccaaagaaagtcactctgtgttgcagactttttaggccatcagagta
cattgacatattgagaacagctacagcctttgcttaggtttaagctaaaggaaagtagtc
ataattgcagtcccagttccatttttattattttcctttgcagatagatctacaaaaaat

Exon 11 +      50160      50254   0   Internal     95    56    Marginal
acttgcactactacctagtgctgctgacttaagatttctgggaaagtctgtgcataattt
tgcatggatagagttaatctttaattacaaggaggcagatttatgaagcattcttagagt
cttacacatacaaattttacttgtttcatgagtatcttgtttacatatttctttcctcag
AAAAAATCTCGCAAGAAGATGTGTATCCTGGTGCTTGTCCTGTCAGTGATTATTCTAATC
TTGGGACTTATTATCTGGCTAGTTTATAAAACGAA
gtgattgcctccgatcgttctcccgctgagctgttttcaagggcaagtgcttgttgaagt
cttgccagaacaaactgatcacaagaagacagcatatatcagaacgtcctgtaatcattt
agttagaaactaactactaactagtctttggaattcgtgacctatggagacagtaattat

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