-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (13797 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (7 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 618 790 1 Terminal 173 73 Good agtggtgggattacaggcgtgagccactgtgcctggcctcctttttatttttttcactga acaaaccatgaaactttcccagatgtaaatatctatttcccatttttctttttttaaaat aaggcattattttaaccatttgagtgttagatattatttttagataatattttaatttag GCATAACTGCCGTGCAAAATCTGAAGATTAATATCTACCTTGTGAGTCATTCCTCTGTGA GACAGTGCATGTTAAATATGTTGAATTGGCAGGTGAAAAAGGAAGAAAAAATGAGTAGTG ATTGGTTATCCACAGCTATGAATGAGAAATTGAAGGTAGTAGACTATGGATGA caaacctattcttggtttccttctgtttctgaaattctaattactaccacaactacatga gagacactactaacaagcaaagttttacaactttttaaagacatagactttatgttatta taattaaaaatcatgcatttttgtcatattaataaaattgcatatacgatataaaggcat Exon 2 + 2241 2624 1 Internal 384 97 Excellent caaaagagataaacaataagtcgctgtttcttcatacgtacttcttacttttgaaaagat gagaaaagtctgggccatgtcacaaacattgccaaaaataagacaataaaaagcacagtt gtcagagttaaaccacaacagtaccaaactctaccatttcttttctttttctcccactag TGCTTCTCATTAAAGAGAGTGGAGCCTGGTCTTACAACACCTCCACGGAAGCTATGACTT ATGATGAGGCCAGTGCTTATTGTCAGCAAAGGTACACACACCTGGTTGCAATTCAAAACA AAGAAGAGATTGAGTACCTAAACTCCATATTGAGCTATTCACCAAGTTATTACTGGATTG GAATCAGAAAAGTCAACAATGTGTGGGTCTGGGTAGGAACCCAGAAACCTCTGACAGAAG AAGCCAAGAACTGGGCTCCAGGTGAACCCAACAATAGGCAAAAAGATGAGGACTGCGTGG AGATCTACATCAAGAGAGAAAAAGATGTGGGCATGTGGAATGATGAGAGGTGCAGCAAGA AGAAGCTTGCCCTATGCTACACAG gtagggagtttgcggcagcagtgggaggtagtttcagtgtgtgggcatcttggcaaattt acagcatgcaaaaactgctctctattgtggtcattttatgttccaaaagattctgtttaa ctgctaaagtttctctcttttgctgttttgtgtgaatgtgggcaagaatatgtggatatg Exon 3 + 3297 3404 1 Internal 108 100 Excellent aggtttaggataggtgggcctgaaactcagatttggaactttgtaaaacacttcagttaa agtctatggcactctgtaggactgctgatgtctctgttgcacactgttgattctaaaatc aaaggcactcagtataagcacagtaatagtcctcctcatcatgctttgtattttccgtag CTGCCTGTACCAATACATCCTGCAGTGGCCACGGTGAATGTGTAGAGACCATCAATAATT ACACTTGCAAGTGTGACCCTGGCTTCAGTGGACTCAAGTGTGAGCAAA gtaagtctggttcttgcctctttcttcacttgagatggtagcaccatctcacgtcctagc tggcattagagtcaggtctgcatgccttcccttccctggtgcagatggtgtcatatggtg atcgtgagctgagactatgaagtcagaccctgctgggtttgagtcctagattcaccagtt Exon 4 + 5865 6053 1 Internal 189 74 Good atgggagcccagagccttcagtgtacctcatctgggaattgggacaacgagaagccaacg tgtaaaggtagagttgttccacatggagacttactgtgaacattctttctctcaacccat actggaaatgggcaagctaattctaggccgtgctaatatcaatgcgtatatttgttacag CTGTGACATGCAGGGCCGTCCGCCAGCCTCAGAATGGCTCTGTGAGGTGCAGCCATTCCC CTGCTGGAGAGTTCACCTTCAAATCATCCTGCAACTTCACCTGTGAGGAAGGCTTCATGT TGCAGGGACCAGCCCAGGTTGAATGCACCACTCAAGGGCAGTGGACACAGCAAATCCCAG TTTGTGAAG gtaagcttgagatccttcgatttatactttcttaaagaacaaccatcttcaaacttggac agtgaaaaaaaaaaccaatacccactttaactatagaaatcagatttgatgagcaaccct cgtatctttgagattcatttaaaagaactaatgtttggccagggaaaggatcatatgtgt Exon 5 + 6872 7175 0 Internal 304 63 Marginal atgacccatatgttgtcctcagactgcgtgaaatctttccttggaccataatttattttg tgtgttagaagaacagtgctcaggaactaatgttctgattaattagtcttttaattagtg ccatgatcagtgagggggctgaaattcaaagaaaacacagccatcttcccatttgtccag GGAATTATAAAGAATCTTCAGTTCTCCAAGTGTTGCTTGAATGAACTGGGTTCACTCAAC AAACGCCAAGTACTCTCTAGTTCCACTGCAATATTTTCTGACCATCATTTTGATGTCTCA GCTTTCCAGTGCACAGCCTTGTCCAACCCCGAGCGAGGCTACATGAATTGTCTTCCTAGT GCTTCTGGCAGTTTCCGTTATGGGTCCAGCTGTGAGTTCTCCTGTGAGCAGGGTTTTGTG TTGAAGGGATCCAAAAGGCTCCAATGTGGCCCCACAGGGGAGTGGGACAACGAGAAGCCC ACAT gtgaaggtacagtctttgtttttattttattttaagataaaaagaactattgaagagctt gggaacttggttaccttgggaaacgtattgctggagatgcaaacaaacttctaaagtgct ctctcgtgtgttccagctgtgagatgcgatgctgtccaccagcccccgaagggtttggtg Exon 6 + 9333 9510 1 Internal 178 95 Excellent agatgccacagagccatgcttgtgctctgattattacagaggccctgaagcatcgagttt gcaacacttgatgaattaagtcatattgtatctggatttaatatatccttaaaagtcatt tagtctgaattaatggttgtttgtcttttcttttgcagcaaagaaatttgttcctgccag GTAAGTTGCATTCTTATACAAAGCATGCCATTGAACATTCCACATATTTTTCTCTCTTCA TGTTGGAAGACAGTGCTTTACCTAGTGTTCTCATGTATTCCACAGCAGCTGCCAAAGCCT TGAATCAGATGGAAGCTACCAAAAGCCTTCTTACATCCTTTAAGTTCAAAAGAATCAG gtaagacttgtaaatcacaaatggttatgagagaggtatcttctctacatgctctgtttc tccttgaaccctccaaacttgccaatatcttagggagggagcaggggagaaatcatcacc tgggtattgttctggaaagttgctttattttttgtagaaggagaggaaagaaacggatct Exon 7 + 10159 10211 1 Internal 53 80 Good caggtgcctgccaccacacccagctaatttttgtatttttagtagagattttgtattttt tcgtcatgttggccaggctgatcttgaactcctgatccacccgccttggcctctcaaagt gctgggattacaggcgtgagccactgggcctggcctgttactttatttcttatcacacag ATGAAGAAAATGAGACAGAGAAGTTAAGTAAATTGTCTGAAATCTCAAAGCTA gtaagtggtgtagccaggattcaaactctggcagtctggttctaaaatttgtgttcttaa ctactccgacctgctttgagagaatttggaaaggtcaagtccctctgaatactttttaaa aaattaaaataactttttttgtgtgtgcggttttaagtttacagaaaaattgagcagaaa --------------------------------------------------------------------------------