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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (4461 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +         85        145   1   Internal     61    70        Good
atatccccaacatagcacctagagtctagtaatttttctataatttcaaataatttgtaa
tatatttctgggtctacattttagGAAACAAAGGGGAAGACCAGAGCATTGAAGATCAGTACAAAAATTCTTCAAGAAATCTAA
G
gtaatttgccctcacaagaggaagcagtcccccttggggtcaattgtagtatataatcat
atgtttaaagcaaacaaggccaggcatggtggctcacacctgtaatcccagcactttggg
atgctgaggtgggcggatcacctgaggtcaggagtttgagaccagcctgaccaacacggc

Exon  2 +       1219       1341   0   Terminal    123    69    Marginal
acacccagctaatttttgtatttttagtagagacagcatttcaccatgttggccaggctg
gtcttgaattcctgacctcaagtgatctgcccaccttggcctcccaaagtgctgggatta
caggcgtgagccaccatgcccgaccattttttttttttttttaacaatcggatctttcag
GAACTAATAGAGCGAGAAGTCACTCATTACCACAACAGTGCCACTTATGTGGAATCTGCT
CCCATGACCCAAGCACCTCACACCAGGTCATACCTCCAACATGAGGATCAAATTTCAGCA
TGA
aatttgaagggagaaaatacccaaactgtattcaatactaagaaactgcatatgagaata
ttactgtattgttaatagctataggggagggagccatgttgtagactaatcaatccattt
atgttcaatttgtttatgttagaaaacctgcactttctctgatattggtagcagtgtaag

Exon  3 +       2698       2827   0    Initial    130    74        Good
ctagtaccctttggaagcataaaaaaactcatactggagaaaagccctataaatgtaaaa
aaatgtaaaggctttaatcactacagtttttgtcaaaaacatgaacagtcacatacttga
gagaaactgtgaatgtaaggtgtaggaaagtacttaattttcccagatttcctcaaatac
ATGAAACGAATCAAACTGGAGATAAACCCTATGACTATAAGCAATAAGGTAAAGCATTCA
ATTTTTCCATTTCTTTTTGAAAACTTGAAAGGACTCACTGAAGAAAATCCATATGAATGT
TTAAAATGTG
gtaaggcctgcagttgttccagtggtatttgatggtataacataactcattctagagaaa
aactttatgaaggtatcgaatgtgagaatgccttcatttatcctataactcactcagaga
cacatggtaacacatactccagattgaccttataaataaaagaatgcccaccagattgaa

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