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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (53333 bp)
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PERCEVAL Exon Candidates (13 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +      21194      21257   2   Internal     64    77        Good
ggtaccttgagggaagaatatatgtcttcatattgtccattagcaaatctgagatttatt
tagtttgttagagcattctagttccattggtgctttcttgttccagctgctttctaggtg
gccaggaaattaaaaaccaaagatgaggccgggctcagtggctcacgcctgtaatcccag
CACTTTGGGAGGCCAAGGCAGTGGATCACAAGATCAAGAGATCGAGACCATCCTGGCCAA
CATG
gtgaaaccccgtcttgactgaaaatacaaaaattagctgggtgtggtggcgtgcacctgt
agtcccagctgcttgaaggctgaggcaggagaatcgcttgaacctgggagatggaggttg
cagtgagctgagatcacactactgcactccagcctggcaacagagtgagactctgtctca

Exon  2 +      34276      34406   0   Internal    131    96   Excellent
ttaattgcagagtacagcatagggatggggaaactggattgtcccagttttatctgaact
attgctcagactaaaggatgtttgttttaaagtgttccttctagcttcccctttctgaat
ttttattgttatgatcctacttatactaggaattttcttctcatttctcttgtttctcag
ACAACCTCATCAGCCTTGAAAGGTGCCATCCAGTTAGGCATTACCCACACTGTGGGGAGC
CTGAGTACCAAACCAGAGCGTGATGTCCTCATGCAAGATTTCTACGTGGTTGAGAGTATC
TTCTTTCCCAG
gtacagagtttaatgttcaggagcatgtcctggaaatgtggccttttcaaatcagcccag
ggcagttttaggggttcaggtcggacaatttagacatgtgtccatttcttaacctggtta
caatcagggcgatgtgggactagagagttcggagagcagatactgtcctctagatgcttc

Exon  3 +      34853      34970   2   Internal    118    96   Excellent
tcttgctgtccatgctgtgccattgtctcactaactcatctaagaagggctgtgattatc
ttaggaggaatgtattcccccactccccccaccatgaggtgactctgagtgtcttcgcaa
ggtagattctctggatgatagggactggcaagttatggctacctctgtttaaccccacag
TGAAGGGAGCAACCTGACCCCTGCTCATCACTACAATGACTTTCGTTTCAAGACCTATGC
ACCTGTTGCCTTCCGCTACTTCCGGGAGCTATTTGGTATCCGGCCCGATGATTACTTG
gtaagcatctggatatcaggacactgtgactccagtatcagagggatattcccaaaggaa
ggccccttttctccacagtctcgctctggtttttatttagaaaagaattgcatctgtagt
tgatttttgtgttgggcaaggccctgatgtgtctaaatctcttagttcttctctgtttgc

Exon  4 +      35156      35308   0   Internal    153    83        Good
catctggatatcaggacactgtgactccagtatcagagggatattcccaaaggaaggccc
cttttctccacagtctcgctctggtttttatttagaaaagaattgcatctgtagttgatt
tttgtgttgggcaaggccctgatgtgtctaaatctcttagttcttctctgtttgccccag
TATTCCCTCTGCAGTGAGCCGCTGATTGAACTCTGTAGCTCTGGAGCTAGTGGTTCCCTA
TTCTATGTGTCCAGCGACGATGAGTTCATTATTAAGACAGTCCAACATAAAGAGGCGGAA
TTTCTGCAGAAGCTGCTTCCAGGATACTACATG
gtaagggagagagaagcactgtccacctgtgctgctcacttctgggcaaggctggggagg
ctgtcttcagcagggtaaaacagtgtcagcacttctatcttaagagtgtagttcaggcca
ggcacggtggctcatgcctgtaatcccaggactttgggaggccgaggcaagaggatcaca

Exon  5 +      35458      35522   1   Internal     65    62    Marginal
tctgcagaagctgcttccaggatactacatggtaagggagagagaagcactgtccacctg
tgctgctcacttctgggcaaggctggggaggctgtcttcagcagggtaaaacagtgtcag
cacttctatcttaagagtgtagttcaggccaggcacggtggctcatgcctgtaatcccag
GACTTTGGGAGGCCGAGGCAAGAGGATCACAAGATCAGGAGATCAAGACCATCCTGGCCA
ACATG
gtgaaacctcgtctttactaaaaatacaaaaaattagccaggcgtggtagcgggcgcctg
tagtcccagctactcaggaggctgagacaggagaatggcgtgaatctgggaggcgaagtt
tgcagtgagccgagatcctgccactgcactccagcctgggtaacagagcaagactccgtc

Exon  6 +      36802      37075   0   Internal    274    99   Excellent
cttaccattgaaatagatgcatagggaaatgtaaagcatatatgatgtaggtttatggac
acattgtgtctaaatctcatataggagataaagggaggatgggtggtaacttttactggt
gagtttcactgaaaatcagctaagttgttctcctacttctgtttccttttgtgttctcag
AACCTCAACCAGAACCCTCGGACTTTGCTGCCTAAATTCTATGGACTGTACTGTGTGCAG
GCAGGTGGCAAGAACATTCGGATTGTGGTGATGAACAATCTTTTACCAAGATCGGTAAAA
ATGCATATCAAATATGACCTCAAAGGCTCAACCTACAAACGGCGGGCTTCCCAGAAAGAG
CGAGAGAAGCCTCTTCCCACATTTAAAGACCTAGACTTCTTACAAGACATCCCTGATGGT
CTTTTTTTGGATGCTGACATGTACAACGCTCTCT
gtaagaccctgcagcgtgactgtttggtgagtttgttacttagacatcaaaaatctcagt
tactaaaacagcttgattgttcttaggcattaagtttgtgggagatggaactctgttcct
tagcactgtatgtcctgggctgtatttaaaataagtcttaattagttcattgccattcct

Exon  7 +      37315      37538   1   Terminal    224    80        Good
ttactaaaacagcttgattgttcttaggcattaagtttgtgggagatggaactctgttcc
ttagcactgtatgtcctgggctgtatttaaaataagtcttaattagttcattgccattcc
tttacatttttactttctccccgtttatcctcccacaatgggatttatttccttctctag
CTAGCCTGGGCCTCACAGTCAAATGTTCTGCTTATTTTCATACCAACATCATCCTTCCTC
AGATTTTGGTCCTGGCTGCCAAATCCAAATTTATATTTTGGAAGCTGAGTGCTGCTGAAG
AATATTACACAACCGTGTATACTGGCATCTACAGAATTATGATATCCAACCCCACTTGGG
CTTTCAATATCGATCTTCAGTCCATTTGCTGTTGCTCTCAATAG
ggatttcagatgtttggcattctaatcaaaccattttctgactctcatctccctagcttt
gtttctcaacaagctaccttaactttttatcctatttcatcctctcatgctgcccctgtc
accaatggataaatgtatctacattttactttattttttattttttgagatggagtttca

Exon  8 +      39163      39372   0   Terminal    210   100   Excellent
aagtaggtggatattttgagcctgggaggttgcagctacagtgagccgagatcacaccac
tgcactctagcctgggttacagattgataccctttctcaaaaaaacaaaaaaattgtgag
atcctgaaaaatatttttatttcttccaaggctcagatcatgtttttttccttccattag
GTGCTGCAGAGCTTCAAGATAATGGATTACAGCCTCTTGATGTCAATCCATAATATAGAT
CATGCACAACGAGAGCCCTTAAGCAGTGAAACACAGTACTCAGTTGATACTCGAAGACCG
GCCCCCCAAAAGGCTCTGTATTCCACAGCCATGGAATCCATCCAGGGAGAGGCTCGACGG
GGTGGTACCATGGAGACTGATGACCAGTAA
gtgggctcagggccactaggggggagaacataggcccacagcacttttcttttctttttt
ttttttttttttttttagtttcactcttgttgcccaggctgatgtgctgatgtgcaatgg
cacgatctcagcctactactacctccacctcctgggttcaagcgattctcctgcttcagc

Exon  9 +      40788      40870   0    Initial     83    58    Marginal
tctcattttctcctgtttttttaatgtatttttttctctttttgttttcttgatcactta
ttatctgaccttctggtttatggaggatgaggcagttatgtgtaggtttcacttccccat
cctgatctgactaaactagccaacagattttctcaccctttcctttttgccttttccagt
ATGGGTGGCATCCCTGCCCGGAATAGTAAAGGGGAAAGGCTTCTGCTTTATATTGGCATC
ATTGACATTCTACAGTCTTACAG
gtgaggagcatatggatcccaaattaagagagggtggatacagataaccagtcacgtttc
tcttttagataggtttgttaccaagttcttccggaagcaagaacagtgagttgcagtctg
gctacttacttcattagttttcagatggtttatttccttgattttgcctctttccccggc

Exon 10 +      40943      40975   2   Internal     33    53    Marginal
ccctttcctttttgccttttccagtatgggtggcatccctgcccggaatagtaaagggga
aaggcttctgctttatattggcatcattgacattctacagtcttacaggtgaggagcata
tggatcccaaattaagagagggtggatacagataaccagtcacgtttctcttttagatag
GTTTGTTACCAAGTTCTTCCGGAAGCAAGAACA
gtgagttgcagtctggctacttacttcattagttttcagatggtttatttccttgatttt
gcctctttccccggcctttataacccttcctcccccatctccccagacataatgtatacc
ttctgtggaaagctgagtcagtccttggaagcaccagggtagaatatgccatctgtctgg

Exon 11 +      42541      42644   2   Internal    104    90   Excellent
gacctcaggtgatccgcccacctcagcttcccaaaatgctaggattacaggtgtgagcca
ctacgtctggccccttccgtttatttcatctgtaggttttacccttctgctaggggctca
gtctgggggaagatggcccttggactagagttcctcttgccgggcctcctaactctatag
CATTTCTTCTGCTCTGCAGGACACTGTCTCAGTGCATCGCCCAGGCTTCTACGCTGAACG
GTTCCAGCGCTTCATGTGCAACACAGTATTTAAGAAGATTCCCT
gtaagtggtttctaccaattgactgcctactcctgcccagtggctcccttaccccaagag
aacagagggcaggacacctctggtagggagctgccaatgccagaggcctctccttccacc
tacatcccatgagagccatttcttgtcctttgtgttagtctgtcatagtcatttccaagt

Exon 12 +      49525      49663   2   Terminal    139    98   Excellent
aatatggttaattaaaacagtgtgcttctaaatctagtagcttctcagcctcttctttcc
aaattctaaattgattccaaagtgaaaattagagaagcagtatgagatttaaaaggagag
tcctttgttgttgtcttctaattctttttctctctgcttccattttttttctcctgttag
TACAACCTTGGAAAAGCTTGAAGTTGCAGAGTCAGAGTTCACCCATGTGAGTATCTGGGA
TGTGTGGGAGGTGAACGTTTTGCAAGGTATAAAGAGGATCACTGATGGCCTGGAGCAGGA
AGTTAATTGTCAAGATTAG
aggatctgggtacctcctaaatcttgttttttattttttattatttttttattttgtact
tatttatttatttatttatttatttttgagatggcgtctcactctgttgcccaggctgga
gtgcagtggtgcaatctcagctcacctgcaacctctgcctcctgggttcaagcagttctc

Exon 13 +      50468      50526   2   Internal     59    74        Good
caaagtgctgggattacaggtgtgagccaccatgcgcggccgccatcttgttttttaaaa
aatatttttggtacctcatacttggaggctgaggctgaaatagaaatttcttaacgcttg
aattccatttctgcttaatctcatactccacatccttaactttacactctcccttttcag
TAAGCGCAAAGCCTCAGAAGACCTGGAACAAGATTCTGCCATCTCTGTGATCCCAAGAT
gtcagcccttgccccagcaatgctgaattttcttctacttggtcatcaaaaaaggagtgt
aatagaagtgaggggagctgctcctccatcttcttcctgaagaagaaccttctctccttc
ctcttcctcatgaatgggccttagtgcctcagagagttgaggaccgcagcatcccctcca

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