-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (10896 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (6 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 2801 2907 0 Initial 107 66 Marginal aagaaaaagaaaaagaaaaccacaaaagataacgccagggatcaagtcaagggcatgttt ggtttggtttggaaagagactctctagaagggacagaaaagggtcaagggtggcccaaaa ctgactgctgacccctcctacattcaggagtctgtgacagccaccccaacacgtgacgtc ATGGCCAGTAGGGAAGATGAGCTGAGGAACTGTGTGGTATGTGGGGACCAAGCCACAGGC TACCACTTTAATGCGCTGACTTGTGAGGGCTGCAAGGGTTTCTTCAG gtgagagtctcctccccaatggaaatagccctccaaaccaaactccctattagtcagcct ttacaccctcgctggtgcccaagcctgtccagctacattactcctttatcttagagtcta actaccctgtggctggcatcctacatcttgccaaacacatcactgtataaactggtggca Exon 2 + 3361 3554 1 Terminal 194 46 Marginal gtactacatcaactaggctttctggagtgatcctgtgttgccatggaaatgcttgagatg tgttggatactatccacccctggggacctttgggcacagctcagattagtccatttcacc agattcccaggtcttttagaccatgtcatctcagcccctcacctatccattgcatcccag ACTCTAACAACATCTCTGTGTCTCACAGGAGAACAGTCAGCAAAAGCATTGGTCCCACCT GCCCCTTTGCTGGAAGCTGTGAAGTCAGCAAGACTCAGAGGCGCCACTGCCCAGCCTGCA GGTTGCAGAAGTGCTTAGATGCTGGCATGAGGAAAGACAGTGAGTTGGCCCCCTACATCT CAAGAATCCATTGA ctgcgtctgtctttgtccttgttcccaacagtgcattctctacatagcaggcacagtact ctttttgaaactagttggattatgtcactattcactcaagacatccaatggctccccatc tcaaagtacgtgatctcatgatctagctctcccacaacacctttcagactttatttcata Exon 3 + 5939 6197 2 Internal 259 87 Good tctttcatactttcctcgccacccttcccttctcccccacagtgcagttttctgctgcag ttcttcacaggttggtggaagtgtataggagccccctgcctcctggagcctctaggactt tagccaagcccaagaaagtctcaggaattccccccactgcccccatccttcgttgtgcag GGCAGCTGAGGGGCCCCAGATCAGGGACCAGCAGAGAGAAATGCTCTGCTGGTCTCAACA GCTTTGTCATGATCTCTTGCCTGGCACAGTGATACTGTCGGCAGAAGCCCTGGCATTGCG GCGAGCAAAGCAGGCCCAGCGGCGGGCACAGCAAACACCTGTGCAACTGAGTAAGGAGCA AGAAGAGCTGATCCGGACACTCCTGGGGGCCCACACCCGCCACATGGGCACCATGTTTGA ACAGTTTGTGCAGTTTAGG gtgagcaccgacaggatttgggttggaatacaactaaaagggcacccaaaaatgctggtc tgaaggagaggggtgtatgccatgcactgatactgagaacagatctccagaaccccagcc tgagcaggcttctcagcaaggaactcttccaagataaggctggcgaggcctaaaggaggg Exon 4 + 6420 6559 0 Internal 140 100 Excellent cacccaaaaatgctggtctgaaggagaggggtgtatgccatgcactgatactgagaacag atctccagaaccccagcctgagcaggcttctcagcaaggaactcttccaagataaggctg gcgaggcctaaaggagggccctagggccagagcctctagctaatgttctgatcattgcag CCTCCAGCTCATCTGTTCATCCATCACCAGCCCTTGCCCACCCTGGCCCCTGTGCTGCCT CTGGTCACACACTTCGCAGACATCAACACTTTCATGGTACTGCAAGTCATCAAGTTTACT AAGGACCTGCCCGTCTTCCG gtgagtgacctcccctcatctttcaggaggcaaacacttcagtaaattgtatatccaccc cgaaaagtcactgactacaaattatcacatgcgtcagcctttccaagcattaggtcttga attcccagctttggttttaaatgtgccaatcagaactgggagttcttctccatctctgaa Exon 5 + 7892 8037 2 Internal 146 100 Excellent gtggcacacgcctgtaatccaagctacttgggaggctgaggcaggagaattgcttgaacc caggaggcagaggttacagtgagcagagatcacgccactgcactccagccagggtgacag tgagactctgtctcagaaaaaaaaaaattgaaaagtgtccttgtttcctgctttccacag TTCCCTGCCCATTGAAGACCAGATCTCCCTTCTCAAGGGAGCAGCTGTGGAAATCTGTCA CATCGTACTCAATACCACTTTCTGTCTCCAAACACAAAACTTCCTCTGCGGGCCTCTTCG CTACACAATTGAAGATGGAGCCCGTG gtgagatggtgctagagcaatagggggcatgtgtcctcatggtacaggatgtggtcaggt gacctagaggctcctaatcctagtatctcccacagtggggttccaggtagagtttttgga gttgctctttcacttccatggaacactacgaaaactgcagctccaagagcctgagtatgt Exon 6 + 8433 8617 1 Terminal 185 86 Good agcacctcccaaagcccagagccttttgctgcaccacctctgcccaaatactcagctcct tgagtccatccacccaggccttctagcctagctatcaaacctgcagactaggtctatccc agcctcagtccccggggcaccacgcaggcccacccctgccacccaacttgtccttcccag CTCCCTATCTTACAGACCGACCTGGAGTTACCCAGAGAGATGAGATTGATCAGCTGCAAG AGGAGATGGCACTGACTCTGCAAAGCTACATCAAGGGCCAGCAGCGAAGGCCCCGGGATC GGTACGGTGGGACACTGAGGGCTTGGAGGCCACACCAGGGCAGGAAGGGGTTGGTGAAAC ATTGA gcttgggaggaatgtttttttactgtcctttccttagggaattcaggtatcgtggggtct agtccttccccctggccatccctgtctcacatcgtttcagcatccaaattgctgtatttg gatactgctgtttcatctcactttttccagattttttttttattcagtacagatgcaaag --------------------------------------------------------------------------------