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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (4881 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1230       1761   0    Initial    532    71        Good
cccaccacttccccaccattcctgccaggggcaatgtctgtgtgtttttttcaatgaaca
tgacttctggagtcaaggttgttgggccattccccccgttccactcactgggaatataaa
tagcacccacagcgcagaacacagagccagagagctggaagtgagagcagatccctaacc
ATGAGCACCAGCCAACCAGGGGCCTGCCCATGCCAGGGAGCTGCAAGCCGCCCCGCCATT
CTCTACGCACTTCTGAGCTCCAGCCTCAAGGCTGTCCCCCGACCCCGTAGCCGCTGCCTA
TGTAGGCAGCACCGGCCCGTCCAGCTATGTGCACCTCATCGCACCTGCCGGGAGGCCTTG
GATGTTCTGGCCAAGACAGTGGCCTTCCTCAGGAACCTGCCATCCTTCTGGCAGCTGCCT
CCCCAGGACCAGCGGCGGCTGCTGCAGGGTTGCTGGGGCCCCCTCTTCCTGCTTGGGTTG
GCCCAAGATGCTGTGACCTTTGAGGTGGCTGAGGCCCCGGTGCCCAGCATACTCAAGAAG
ATTCTGCTGGAGGAGCCCAGCAGCAGTGGAGGCAGTGGCCAACTGCCAGACAGACCCCAG
CCCTCCCTGGCTGCGGTGCAGTGGCTTCAATGCTGTCTGGAGTCCTTCTGGAGCCTGGAG
CTTAGCCCCAAGGAATATGCCTGCCTGAAAGGGACCATCCTCTTCAACCCCG
gtgagctcccagacactcctgggtggggggcaaggctgaagcaggggccagccagggaag
gtagcttctaagggtttgatatctgttatctcattgggtcctcattttctttttattttt
ctgagacagagtctcactctgtcacccagtctggagtgcagtggtgcgatcttggctcac

Exon  2 +       3084       3321   1   Internal    238    86        Good
atacattgaaaattgataaataaattacctcctctaaaggaggaggtagtagtgggacct
caaaggccgagcaaaggaggcagaggggtgtctctgatggcccagatcttgggccagtct
tgtcctttggtggctgggagtagggtgctcaccagccctcttctccctctctgcccacag
ATGTGCCAGGCCTCCAAGCCGCCTCCCACATTGGGCACCTGCAGCAGGAGGCTCACTGGG
TGCTGTGTGAAGTCCTGGAACCCTGGTGCCCAGCAGCCCAAGGCCGCCTGACCCGTGTCC
TCCTCACGGCCTCCACCCTCAAGTCCATTCCGACCAGCCTGCTTGGGGACCTCTTCTTTC
GCCCTATCATTGGAGATGTTGACATCGCTGGCCTTCTTGGGGACATGCTTTTGCTCAG
gtgacctgttccagcccaggcagagatcaggtgggcagaggctggcagtgctgattcagc
ctggccatccccagaggtgacccaatgctcctggagggggcaagcctgtatagacagcac
ttggctccttaggaacagctcttcactcagccacaccccacattggacttccttggtttg

Exon  3 +       3855       4021   1   Terminal    167    62    Marginal
gaaacacttggagcctgatactgtcatttgtgcatatggaagggactgtctcacctccag
ggcccaccctgctgctatcagaggtagcccaagggaaaaaatccacagggttgctggagc
taattttccagggaacagtatcagttcacaatcccatcacctcattgtctttatcctcag
GGGAAGGAGGTTGCTCTCCCATTCCCAAACCCTTCACTAACCGCTCCCCTGGCTCCTACC
CACTTCAGGCGCCCTCTTACCACAGTGAAAGCCCAATCACAGCCAATCAGGAAGCAGCCC
ACTCCCGAATTGAAACAGACAAGTTCACTGCCATTTCTGTAGTTTGA
gatcattcacttcccccattcctgcagatgacaaaagagagtggtccattattttcccaa
agggaagggacaagggtacccagggctggcctggcaactgcttgaaggccaaggcagacc
aaggtttagctggaccaccaggatttgactacatcagttgtttaagtctgaaacccttcc

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