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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (5708 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1997       2234   0    Initial    238    79        Good
gccattgtattaatgttttgatgtggcagccagtcctccgaccctctccctagcttccca
gaccccttgctcttgtcccactttgccacccatgagttgatttaatggcttaaatagtgc
tgaaatattggtggccaatctgcctccactctcagccacagagatcccttttttggaggg
ATGACTCGAGATGAAGATGATGATGAGGAAGAAGAAGAAGAAGGGGGCTCATGGGGCCGT
GGGAACCCAAGGTTCCATAGTCCTCAGCACCCCCCTGAGGAATTTGGCTTCGGCTTCAGC
TTCAGCCCAGGAGGAGGGATACGTTTCCACGATAACTTCGGCTTTGATGACCTAGTACGA
GATTTCAATAGCATCTTCAGCGATATGGGGGCCTGGACCTTGCCTTCCCATCCTCCTG
gtgtgtggctttccctaaggggcaacctgtggtttctggtgggttggtgggtgaaataaa
gagcctgcagggagtagctgggggatgggaagtgtgagaagactgatgatttcagagaga
ttaatagagcccaagtcctttcccatcccagcaaacacctgccacctttctgcagaactt

Exon  2 +       3790       3896   1   Internal    107    98   Excellent
ccccatcctagaaccagagaggacaatggtaagtctggaggaaggggaagtttaccagcc
ttttgttattcttctgaagttctgtgtgttctccctccctgaagtttcttcctgtacact
tgtctccttttttcctttggactctttctctcctgcttcttcatctctctgctcttccag
ATCTTGATTCCCAGGTTTCCCAGGAGGGTCTTGGCCCGGTTCTACAGCCCCAGCCCAAAT
CCTATTTCAAGAGCATCTCTGTGACCAAGATCACTAAACCAGATGGG
gtgagttgaaagaaagaggtaaaggaaagtatggccagggaacgaatgccctgaaacagg
gatctgtgtaaagaaactgctgagcataacctttagtaacattcggaatatggtggggac
ttctctttgtagatagtggaggagcgccggactgtggtggacagtgagggccggacagag

Exon  3 +       4029       4119   0   Internal     91    90   Excellent
tcctatttcaagagcatctctgtgaccaagatcactaaaccagatggggtgagttgaaag
aaagaggtaaaggaaagtatggccagggaacgaatgccctgaaacagggatctgtgtaaa
gaaactgctgagcataacctttagtaacattcggaatatggtggggacttctctttgtag
ATAGTGGAGGAGCGCCGGACTGTGGTGGACAGTGAGGGCCGGACAGAGACTACAGTAACC
CGACACGAAGCAGATAGCAGTCCTAGGGGTG
gtaagttaaaagacaaaggggttcatctcaagattccttggggaagggaaatcttactct
tctacccttgtcctttgcttctgcctagtctctttcatttagcctatttacgtgtatgac
tttcttccttagatccagaatcaccaagacctccagccctggatgatgccttttccatcc

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