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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (48542 bp)
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PERCEVAL Exon Candidates (14 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +        595        822   0   Terminal    228    54    Marginal
agctcttcgggaggctgaggccggagaatcacttgaacccaggaggctgaagctgcagtg
agccgagatcgcgccactgcactccagcctggccaaagagcaagactctgtctaaaaaaa
taaataaataaataaaaaataaaggtcttaatacttgttaattactattactgaccccag
GAACTCTCTGAAGCACTTTTCATGCAGGTATCACCTTCTTTAGCACTCACATTATGTCTT
ATCGGAAACAGGTTTAGAGCTGTCAAGAAATTCCTCCAGAGTCGTTTACACTTCCAGCAG
GGGAGTCAAGACTTCAACCCAGAAACTCACAAGCAGGAAAAACTTGGCAAACAGGCACGG
GTCAGACAATGCTTAGGGCTTGCTCAAGGACTCGTGACCAGTTACTGA
tctatgcagatcttctgattgcaaactgatagctggattgtaacttgaagggtccgataa
gatgtaaacttcataaaacaggatttggggaggtaaatggagtagagtcctccagaggag
tcgagaaagctagcttggccctcaattgtggttgaggtgattctttcatttagggcctat

Exon  2 +      13555      13697   2   Internal    143    63    Marginal
tggtggggcatgcctgtaatcccagctactgtggaggctgaggtgggagaatcacttgaa
cccagaaggcggaggttatagtgagctgagattgtgccattgtactccagcctgggcaac
aagaacgaaactctgtctaaaaaaacaaaacaaaacaaaacacaatccttgcttttccag
GACGTACAGACTGAGGAGGAAAAGCCAACAAAGTGAGATGATGGTTGTGACGGGGGTACT
GCAGGTGCTGAGAGATCAAGAACACAAACTCAAACCTAGTGAAGGAATTCACAGAAGGCC
TCCCCAAGGAAGTGATGTTTCAA
gtaaatcacaaaatggttagcagggactagccaaaaaggaagggaaagagaattgcttga
acctgggaggcagaggttgcagtgagccaagatcgtgccacagaactccagtctgggcaa
cggagcgagaccgcgtctcaaaaaaaagaaaatagtttagcagtggctttgtggagaagt

Exon  3 +      15188      15305   1   Internal    118    51    Marginal
ttgagcttgggaggcagatgttgcagtgagccaagatcatgccacagcactcgtctgggc
gacagagtgagaccctgtctcaaaaaaaaaaaaaaaaaaaaagtcttagaggtcatacag
gtgaattcagcatttattaagcaactacatgataaaagtcatcttccccttcccatgcag
CTCAGTTCAGTCTCCCTCCACAGATACTGAGTATTTTAAAGGATGGAGAACTTGAGGCAA
AATGGCTGTTTGCACAGAAAGTAGATGTGATTCCTAATTTCCAAGAGCTTCCTGTTTG
gtgtggaactggtaatgtgctacaaaccaactctctggaaaaacaaaatactctgatttg
tagtgcttgtcaatttcgggtctgtttacgcccagcatcgctgatttcaagctgtcaact
tagtgtcactaaactcgaagttggaagagatatgtgtgcacaatgggttctcaggagctg

Exon  4 +      16082      16177   0    Initial     96    68    Marginal
caggctggtcttgaactcccaacctcaggcgatccgcctgcctagctaggcctcccaaag
tgctgggattccaggcgtgagccaccatgcccggcctgttgacatctttttaaaccagat
taagttattggtgcttcttgttcccgacagcagtcccagctatctgacttcatgtgaaag
ATGGCTAATGCAGAAGTGAGTGTCCCAGTGGGGGATGTGGTTGTGGTACCTACTGAAGGA
AATGAAGGGGAGAATCCTGAAGACACTAAAACCCAA
gtgattttgcagttacagcctgtgcaacaagggtaagtggctagagatttgggtattctg
aagtattttgggaagcttcaagggtggggaaattataactttatggttgcttagcacaat
ggaacatttaacatcaatcagagctggctcagttttcatctgtataatatactgtattgc

Exon  5 +      17057      17211   0   Internal    155    54    Marginal
aaaaaattagctgggcgtggtagcaggcgcctgtagtcccagctacttgggagggtgagg
caggagaacggcgtgaacccgggaggcggagcttgtagtgagccgagatcgcgccactgc
actccagtctgggcgacagagcgagactccatctcaaaaaaaaaaaaaaaaaaattccag
GCCTACATGGATGGAGCTGGAAGCCATCATCCTCACCAAACCAACACAGGAACAGAAAAC
CAAACACTGAATGTTCTCACTCATAAATGGGAGTTAAACAATGAGAACACATGGACACAG
GGAGGGGAACAACACACACTGGGGCCTGTTGGGGG
gtgagggggtgatgagagggaacctagaggacgagtcaataggtgcagcaaaccaccatg
gcacacatatacccatgtaacaaatctgcacgttctgcacatgtatcctagaactttaaa
taaataaataaataaaaattccagttctaatcccactcttacacagttatgaatcttcag

Exon  6 +      22543      22655   2   Internal    113   100   Excellent
gagttgtggattcattttcatggtagaagctgctaagcaatcctgggaggtttggagttt
aaatacaatgggaaactagtcagagttataaagtatatttattttatttcttttgagata
gtttgaaacaaatttcttaaccccatgctgtgaatattaattttttcatgatttatgtag
TTTGTTTATCGATGGACACTTTTACAACAGGATTTATGAAGCTGGGTCGGAGAACAACAC
GGCAGTTGTAGCAGTAGAAACTCACACGATACACAAAATTGAAGAAGGGATTG
gtaagggtttttttgtgtttttttttttttttttttttgtcattctaatacctttgactt
tagcttccttggttgagttttcttgccatctgtgccttatgtttttctcccatccctgtg
tgccctaccagtactacagccctcgattttgatggtggtacatcttgagacaccactgac

Exon  7 +      24054      24178   1   Internal    125    97   Excellent
cacactgtgagagcttgggaagagatagctcttaggccaaacttcttccagaggattcct
aaatgataccagcaagagtgaagtattagtcccttagaggaaccaggagactagagattt
tgaatttcagctttggggaagagttgtttgataaataactgatattttttctgttttcag
ATACAGGCACTATAGAAGCAAATGAGGATATGGAAATTGCTTACCCCATAACTTGTGGGG
AGAGCAAAGCCATCCTCCTCTGGAAGAAGTTTGTATGTCCAGGAATAAACGTGAAGTGTG
TCAAG
gtaattgtcttttccatgctgaagccaaatttgggactccttgttctcaaagggtgtgag
ttccatgcatcctttttatcttccactatatcagttttatttatttatttatttatttat
ttatttatttatttatttattttgtggctattgtcctaatgtgtcacaatagaaaaaata

Exon  8 +      25411      25514   0   Internal    104   100   Excellent
tatgctcagagaaggatcgtcttctctaacacaatagtacaggaggttggataatacaag
gcttaggatgtcatctgggtattttttatacaaatgatgtagagttatcatttcattatt
tcccctcttggcctgcctaagttgacattagactctttggacttttctttttacttttag
TTCAATGATCAGTTGATCAGCCCCAAGCACTTTGTTCATCTGGCTGGCAAGTCCACTCTG
AAGGACTGGAAGAGAGCTATTCGTCTGGGTGGGATCATGCTCAG
gtaagctctaatgtcaagcacatacctttcaacaaactttggggcacataatcatgctag
aatctgggcttttctctttaggttgacatttttattctttctgaagaattggcttgagca
atccgtgcattatttgactttaatcaacttaaaaatcctgggagacgagattgatttttt

Exon  9 +      29396      29553   2   Internal    158   100   Excellent
ggaccagtgaaaatttaaagccccaattagaatttttgcaacctaatgacttctaacact
attaggtttcactaatctacacagtaggctcagcagtgttgtccctatttttccctgagg
cctagttcccactagatgaagtataggctgaactggtacttcttgtctccctttgcacag
GAAAATGATGGACTCCGGACAGATTGATTTTTACCAACATGACAAAGTTTGCTCCAATAC
CTGCAGAAGCACCAAATTTGATCTTCTGATCAGCAGTGCAAGAGCTCCAGTGCCAGGACA
GCAGACAAGTGTGGTGCAGACACCCACTTCGGCTGATG
gtagggggtaggaaaccacctgaaaacccattgtgtttttcagcagaactttccccctta
tttctcccttgtgtgtacatatatatatatatatatatatatatatatatatatatgtat
ttttttattttaattttttttgagacagagttttgctcttgttgcccaggttggagtgca

Exon 10 +      34907      35038   1   Internal    132    94   Excellent
tagaaaatccaatattcatcctagcttacctaagagtctagtttttaaaatagggacctg
cagccaagaggctagaatgttaaaataacaaggtctttgtagctattgagtatgagatat
aggatagctataactttttcgttaaattcactgttctcacctctactggactgtttttag
GTAGCATCACGCAGATTGCCATCTCAGAAGAGAGCATGGAAGAGGCAGGGCTGGAATGGA
ACTCAGCTCTCACCGCTGCTGTCACCATGGCCACGGAGGAGGGTGTAAAGAAAGACTCAG
AGGAAATTTCAG
gtattcttctatagggctcagatgtcttgcagggtcttgtgagccttatcaccattatca
ttatggacacggaagacctcttaattactttcgctggattttctcatgcacgtaaatact
aactatagctacaaacatcctactttaatccatgcaatagccctgcatagtcacatttta

Exon 11 +      36661      36866   1   Terminal    206   100   Excellent
taattgggtgcccactcagggaagcatctagtattccaaagcttattcccttttttcagg
aatggcccaataagaaatcattttgagttaaaataattttgaatttaacgttgtagagat
ttgcctaagtatctaggtagtgtctcttttttaccctctgtcttatccttcttgtgccag
AGGACACTTTGATGTTCTGGAAAGGAATAGCTGATGTAGGGCTGATGGAAGAGGTTGTCT
GCAATATACAGAAGGAAATAGAGGAGCTACTCAGGGGAGTTCAGCAGCGGCTCATCCAGG
CTCCCTTCCAAGTCACAGGTAAGTGCACTAATCCTAACAGTAGCAGTGATTTATTGAATA
CTCACCTCCGTAGGCAGGTCCTGTAA
gccttgcaaaaaccctgatgtataggtattattatcttaattttacagataaggaaacta
aggctcatataagttaagtcacttgtctaaggttcataactaggttttgaactcagatct
ggccatgcttttccacaggtaatttttgtctttataaatggtgccagtagtctgggcaac

Exon 12 +      40013      40064   0    Initial     52    65    Marginal
ctcttatggggaaagagtagaaacaagaccagttgggaagctcttaaaggaattagtcca
agcaagagataatgtatcatggattagagtgggtagcggtaaagttaggaagaagtgatt
agattgagaatgtattttgaatgtcgaactactaagtcttgctgatggattggaggcagg
ATGAAAGAGAAAGAAAGATACCGGGATGATTCACACATTTTTGGCCTGAGCT
gtgagtggtgatgccatttactgagatgaaggccactgggagaggaacagttttagagag
gaaataaaaattagttttacctcttaaattgagatgactattagaccatcaaatagagat
gtcactcatctagatagaagtatgaatgtggaatacaggaaagaggtcagggctggagat

Exon 13 +      42989      43111   1   Internal    123    83        Good
aaaatataacaattaaaccagtagtcattatacatgtaataaatctttgttaaaaatgtg
ttaaaatgcagttaggagagtcccataatttctggttgtttcatatttataaacagcaca
atggagagtggtggaacatatctgttttaactggacaggcatgtcttttgttttaaatag
ATGCTGCTGTTCTCAACAATGTAGCACACACATTTGGCCTAATGGACACAGTCAAGAAGG
TTTTAGACAACAGAAGGAACCAAGTAGAGCAGGGAGAAGAACAGTTTCTCTATACTCTGA
CAG
gtatgtataagttatcgctcttcttcggtgatatcatgctaatattcttgtcttcccatt
ttcttgttgacttttgttggggtaacttttttttttttaaatagtatcagattttgcttt
taaaaataaaaaaaaaagccgcagatgaggtggattgatgagaaacaaaagaggcacaaa

Exon 14 +      46542      47242   1   Terminal    701    88        Good
cctaggcaacataacaagactctgccccccaaataagcacaagaaagaaaacaatgtcac
aacttgcctgaagctacttagtaacaaaaccagacagagacaccaggtctcctgactctc
agtttaatgctcccaagattttacttccctctacacaaagtcttttctttttttccatag
ACTTGGAACGCCAGTTGGAGGAGCAGAAGAAGCAAGGCCAGGATCACAGGCTGAAATCTC
AGACAGTTCAAAATGTGGTACTGATGCCTGTGAGCACTCCTAAGCCTCCAAAAAGGCCCC
GGCTCCAGCGGCCAGCCTCCACCACTGTCTTGAGCCCTTCTCCTCCTGTCCAGCAGCCTC
AGTTCACAGTCATCTCACCCATCACCATCACCCCAGTGGGTCAGTCATTTTCCATGGGCA
ATATTCCAGTGGCCACCCTCAGCCAGGGCTCCAGTCCTGTGACTGTCCACACACTGCCTT
CTGGCCCTCAGCTCTTCCGCTATGCCACAGTGGTCTCCTCTGCCAAGAGCAGCTCACCAG
ACACAGTGACCATCCACCCTTCATCTAGCTTGGCGCTGCTGAGCTCTACTGCCATGCAGG
ATGGGAGTACACTGGGCAACATGACCACCATGGTTAGCCCTGTGGAATTGGTGGCCATGG
AGTCCGGCCTAACCTCGGCAATTCAGGCTGTTGAAAGCACCTCAGAGGATGGGCAGACCA
TCATTGAGATTGATCCAGCCCCGGACCCAGAAGCTGAAGATACTGAGGGCAAAGCAGTCA
TCTTGGAGACAGAGCTGAGGACTGAGGAGAAAGTTGTGGCTGAGATGGAAGAACACCAGC
ATCAAGTTCACAATGTGGAGATTGTGGTCTTAGAGGATTAA
ctggggatctcagggccaggagttatgttttgatttggaattttaattatttgtttattt
ttatcattgtcccactcatttccacataggacccttttttaaaaaaaaaaaaacaaaatc
ttattgttgtaactgaaaatgttgggttcttcccactccctcattgaaaaatggacaaaa

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