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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (5063 bp)
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PERCEVAL Exon Candidates (4 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1223       1406   0    Initial    184   100   Excellent
ctggtttcccagaagcaccccttccccatccccacctactctgaactggcatttcctatg
ccgggtctcttggctgtgttttgaatgcagaggcctctttgccaggagccaagccacagc
ctctctgtgtgaccccagttccaccttgtgctcctaacagggttctctccccttgccacc
ATGAGCGAGTCATTTGACTGTGCAAAATGCAACGAGTCCCTGTATGGACGCAAGTACATC
CAGACAGACAGCGGCCCCTACTGTGTGCCCTGCTATGACAATACCTTTGCCAACACCTGT
GCTGAGTGCCAGCAGCTTATCGGGCATGACTCGAGGGTAAGGAGAGGGCCAGGCCAGGCA
GGAG
gtgggtggtgaccagtggaagggggcaaaggatgggtccatgaggcctgggtgccagtgc
ccctgctgtgttccccacaggagctgttctatgaagaccgccatttccacgagggctgct
tccgctgctgccgctgccagcgctcactagccgatgaacccttcacctgccaggacagtg

Exon  2 +       2503       2672   1   Internal    170   100   Excellent
cggtgtctggggagaggttagcatgtgtaatatacatagggcgggggggttcttgctgca
tgtgcacggacaccaccctgctcacgctgagagaggagtggagactcctggggaagttac
agagggtggccctcaggagcatgggacacaacctctaaatgggacccctgttccccacag
GGTCCCGGAAGCTGGAATATGGAGGCCAGACATGGCATGAGCACTGCTTCCTGTGCAGTG
GCTGTGAACAGCCACTGGGCTCCCGTTCTTTTGTGCCCGACAAGGGTGCTCACTACTGCG
TGCCCTGCTATGAGAACAAGTTTGCTCCTCGCTGCGCCCGCTGCAGCAAG
gtgggggctgggccagccaggtgggggtgagtgaggcctgttgtggggtgggaatcccca
ctcatacctactaatggatgctgcccccacagacgctgacacagggtggagtgacatacc
gtgatcagccgtggcatcgagaatgtctggtctgtaccggatgccagacgcccctggcag

Exon  3 +       2765       2951   0   Internal    187    75        Good
ccgttcttttgtgcccgacaagggtgctcactactgcgtgccctgctatgagaacaagtt
tgctcctcgctgcgcccgctgcagcaaggtgggggctgggccagccaggtgggggtgagt
gaggcctgttgtggggtgggaatccccactcatacctactaatggatgctgcccccacag
ACGCTGACACAGGGTGGAGTGACATACCGTGATCAGCCGTGGCATCGAGAATGTCTGGTC
TGTACCGGATGCCAGACGCCCCTGGCAGGGCAGCAGTTCACCTCCCGGGATGAAGATCCC
TACTGTGTGGCCTGTTTTGGAGAACTCTTTGCACCTAAGTGCAGCAGCTGCAAGCGCCCC
ATCGTAG
gtgggacaagggtcaaagaacggagtgggtagggtgcaggcaagggagtgggatgtggta
ttgggtgaggttgagggccggaccatccccacatctgcatagctaacttccagcctccct
ccaggactcggtggaggcaagtatgtgtcctttgaagaccgacactggcaccacaactgc

Exon  4 +       3076       3194   1   Internal    119    67    Marginal
ctgttttggagaactctttgcacctaagtgcagcagctgcaagcgccccatcgtaggtgg
gacaagggtcaaagaacggagtgggtagggtgcaggcaagggagtgggatgtggtattgg
gtgaggttgagggccggaccatccccacatctgcatagctaacttccagcctccctccag
GACTCGGTGGAGGCAAGTATGTGTCCTTTGAAGACCGACACTGGCACCACAACTGCTTCT
CCTGCGCCCGCTGCTCTACCTCCCTGGTGGGCCAGGGCTTCGTACCGGATGGAGACCAA
gtgctctgccagggctgtagccaggcagggccctaagccagggctcctggacccaggctt
tcccataccacgggcccaggactgtggctccttttctaaaccacctctgggactcagctc
cccccgccaaaaaaaatgggtctccttctgggctccaggattgtctccccactccagcat

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