-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (9791 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (6 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 273 395 0 Initial 123 47 Marginal gcatgcaataaatagcaagacaaggcaggtcttatttttactgaaagtgcttagtaaact atacagtgacaaaccaccgcacaacaggctctcgaaaggaggcagcaaattacccaaaag tgcaggcggcttgctagtgtgcacaggccaaagaaagggcggcaggtggggaaggcagcc ATGGGCCTTGAAGAGCTGACCGAATTGGCAGAATTTCTGCAGGAGGGGAGCTGGGAACGA CCTGAGCTAAAGCTCGGAGCTGTGCGAAGAAACCGGAAAAGCCCAGAGCACTTGCAGGGG CGG gtggggagctagatggtggggtggggtggggacggaggagggccagcaggagacattccg cagggaggggcaagcacgtgtgaggcgggcggggcgcgaagggtcaggcttttgctcaaa acaggcagaggacaaggtcagctcagccgcagaccgagccgctggtgactgtctccgcca Exon 2 + 1220 1304 0 Internal 85 96 Excellent gggatgggcgcaccagcccctcctgggtgagccctagcctggggcttcctatttcgggag ccgggggcgtgggccacgtctcctcatgtgatgcgagggctatttaaagcggcagcccgg gcagggagccgccgtcggagcccttgcacgcctgctctcttgtagcttctctcagcctag CCCAGCATCACTATGGTGGACGCTTTCCTGGGCACCTGGAAGCTAGTGGACAGCAAGAAT TTCGATGACTACATGAAGTCACTCG gtgagcaagccgcggggctcaggatgttggcttggggactggctggtggcgtgcctagcc ccacgcagcactcctgccgcatccctcctggttaagactggggaataggggagcgcggag atggcagcctggcctagagcaggtggggcctgttcagagggggctttggtggtccaaatc Exon 3 + 4689 4861 1 Internal 173 100 Excellent tatctgtgttcaccaaacagaactaagcgcaagactgaattttaaaattcccatgcaaag gctttgaaagatacagtcctccacttccccatacccaggcctgagagttattcattgagt ttcttgtacactgcttctctaccccagctcatatactcataaccttccccctaccctcag GTGTGGGTTTTGCTACCAGGCAGGTGGCCAGCATGACCAAGCCTACCACAATCATCGAAA AGAATGGGGACATTCTCACCCTAAAAACACACAGCACCTTCAAGAACACAGAGATCAGCT TTAAGTTGGGGGTGGAGTTCGATGAGACAACAGCAGATGACAGGAAGGTCAAG gtaagtcagggaaacaggggtggggaatggagagtgctgagactctaaaagagaataggc tggtagtcttggctccctggtattgcaccctgaggggcagactatcatggggaatttaaa tgaaacaagattcataaagcctgtgtagtgctggaatgccactgatgctaaatacatgtc Exon 4 + 6076 6210 0 Internal 135 100 Excellent caaaaaaaactaggggaatgagaacaaggagtaaggtaaggataaaaaagagcacactaa gagacaggcctcataccccttatcacctaaacaatacacagaaccttctcagattctcct actgaaccaccttgctcatcaggatcccttagcctggccttgtggcccccaaactcctag GAAAGAGAGCTGGAAGAGCTGCCAAATGAGAACCAGCTGATGTATGTATGCTGGCAGCAC CCAGAGCTGAGGAACCACTTCAAGGGCATCCAGTCACAGGACTTTGTGGTTGCTGCCCTC TTGTTGGCTAAAGAG gtcacatgatgtggaccaagaaaaggtgtaggaatacagggcaggaagtctaattatcca atacttcctatcactaagggtcttttagacattatgtggactaaccacaaggctggataa agattctcaggactactcctcctcctcagtcagtctttcccagggatagactagtaaatc Exon 5 + 6752 6853 0 Internal 102 90 Excellent tggaggtgaactagatgtcttgcagggatagctgggaggcggattgcctgagctcttgtc ctcacaccatcactagtttgggtcaaaggctgtgtgctctgtggcccagtgtccagaccc caccctgcccctcaattcctgactaagatcacagctcaggcctctaccctctttccacag TCCATTGTGACACTGGATGGAGGGAAACTTGTTCACCTGCAGAAATGGGACGGGCAAGAG ACCACACTTGTGCGGGAGCTAATTGATGGAAAACTCATCCTG gtaagatgggcaactttggagctatatctgattggttattactactgctctttcagccaa gcctgttctaaaaagccaagtcctcccctgagagctgtagaagctgggacaagagagtgg ttgtgggtcagggtggtatcaggtgggaattttctgtgtagtggctttggactcacacag Exon 6 + 8556 8764 1 Terminal 209 62 Marginal gctgactactactctgccaatcggctacccctcgactcagcaccacattgcctcatttct tcctctgcattttgtacaaatccacgaattcttctggggtcaggtgccactgaccgggat ccagttccagttcccatggtgtatgtggttttttttttttttttttaactgcactcatag GGTGCTCTGAGGTCAATAAAGCAGAGCCAAGGCCACCCAGTTGCCTTTTTGCCTTTGGTA ACATAACTCTGGGAGTCTTGGTTTATCCTGTGTGTCAGAGAGTGGGCAGAAATAACGGCC TGAAGGTTACTGAGGAAGAAGCACTGGATGGGAGACTGAAATGGACAGTCTCGGAGCCTG TTAATCAGCTGATCACCTTACACATTTAA taataaaagagctgtacctacacgttgcctttacactgccccccctccatggtcaaatga cctagttcagtcagtgatggggcttccccaggtttggctattgaactgtcacttcaggcc catcctacactgaaagctcttgggtctggctgttctctgtgaaatgctgtagtctctccc --------------------------------------------------------------------------------