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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (19280 bp)
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PERCEVAL Exon Candidates (4 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1207       1543   0    Initial    337    69    Marginal
gtgcacctggttaggaattttctatctcatgacagaaaggcaaacatcttctgacctgac
tccttcccctgacccggggttggctgctcctaccctgcaccttcattcagctccgcccag
tgttgcctggctgcagcctctctgcccatagaactcagagcttactctggctttgccgag
ATGGGGCTGCCCCAGCCAGGGCTGTGGCTGAAGAGGCTCTGGGTGCTCTTGGAGGTGGCT
GTGCATGTGGTCGTGGGTAAAGTGCTTCTGATATTGTTTCCAGACAGAGTCAAGCGGAAC
ATCCTGGCCATGGGCGAGAAGACGGGTATGACCAGGAACCCCCATTTCAGCCACGACAAC
TGGATACCAACCTTTTTCAGCACCCAGTATTTCTGGTTCGTCTTGAAGGTCCGTTGGCAG
CGACTAGAGGACACGACTGAGCTAGGGGGTCTGGCCCCAAACTGCCCGGTGGTCCGCCTC
TCAGGACAGAGGTGCAACATTTGGGAGTTTATGCAAG
gtcaggaggctgccacacacttgaggggtgcttgaaatagcagtggtagagggggatgaa
gagatgggttggaaagtcctgaattctcctactacttttgctgctccttttggaccttct
tgtcctcttcctgcttcctgaaactagaacttcttgtggattgtttctctaagtaacatc

Exon  2 +      13091      13290   1   Internal    200    96   Excellent
cagttctggatcaatcactaattcctgacgtgaccttgcacattcaaccataatgggaaa
ccaggccaaatcattgccaagggctcctctgagaacctcagttaaaagtgaggggctatt
tagtctgcaggaagtgtgtgctgtgtcaatgggactcggtgcctggcctttctcttgtag
ATGGCTGGGCTTTTAAGAACAACATGGACATCAGAAATCACCAGAACCTTCAGGATCGCC
TGCAGGCAGCCCATCTACTGCTGGCCAGGAGCCCCCAGTGCCCTGTGGTGGTGGACACCA
TGCAGAACCAGAGCAGCCAGCTCTACGCAGCACTGCCTGAGAGGCTCTACATAATCCAGG
AGGGCAGGATCCTCTACAAG
gtggtgacctggggacagggggcccagggagggcaaaggggcccagggagggcaagggca
aagagaaggctttgcatcaagcagaactggattcaaatcaccacccagccacttaccagc
catgtgaccatgggcgagtgctttcacttcttggagttccttcaatttcctcttctgcaa

Exon  3 +      15439      15476   2   Internal     38    58    Marginal
tcaaggtactcacaggctgagggataaggaagacccaagtaagactattacagtgtccca
actgctgggggactccagagcaggggtcagcacgccttttctgtatagggcctgatagta
aatattttcaactttgtgccaagtaatccctgtcgcaacaattcaattctgctgttatag
CACAACAGCAGCTGCAGACGACATGCAAATGAAAGCAT
gtgaggcatcaggactaacctggctctcagactgtaagtttttcaacctctggggaaggg
taggcttctcagagggggcagcaattgcttgggccttaaaggataaggagttggcctagt
gagcacagtgagtgaaaatcactgcggtatagggaagagggtgggtggaggcactgaggc

Exon  4 +      16927      17019   2   Internal     93    86        Good
tgccactgtacacactttctcaaccacctcacggttgcatctgccattgaattagccatg
ctgatggctcctacacagacatcatttgaccacctcttgcaactaacctccagacctaca
tgttccttacaacttggaaatccttacaagttgggaatgcctgattcgtttctcttgcag
GGTAAATCTGGCCCTTGGAACTACAACCCAGAGGAAGTTCGTGCTGTTCTGGAAAAGCTC
CACAGTTAATCTGGACAGATACCTCAATTCTAG
gtgaccaacgggagggcttctcaaggcttagctctccctgagacccagctggcttttacc
cttgacctgtgtccctagctgaatcactagctcagatttttctgatctaagcaaacaact
cccagctgaggaatgcaggccacagcacccaatcaagacaaattgttattatcagaaaat

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