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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (19265 bp)
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PERCEVAL Exon Candidates (15 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       3476       3578   0    Initial    103    59    Marginal
tatatacatggatagactgggggtttgggtaagacccctgtgagcagtaacaaccttggg
tatctgggcagttcttatccacacctctgtctgggaggaagagaaaaggattctcctacc
tttctccctgctgagcacgagggatctgctgggacaccacctgcgtgtatgtgtccagat
ATGTACGTGCAAGCTGACCAGCGATTCCCACTGATCTGCCACCAAGAGCACCAACTCGTG
CTGGAGGATCAGGTGTTGGCTCCAAGACCCCAATGGGAGCAGG
gtgaagatgaggctggacacccacccaagtggtagaaacctctgcatacttcctaagact
ggagccaaggcaccctccatccaggtgctatggccgtgacctcatgatgcctgaccccag
aaggccaccagaggtctgtgcccaaaattgggggcacactggacccttcgggtgccccac

Exon  2 +       8436       8732   1   Internal    297    87        Good
tctgtgtcacccccgtagcctctcgaagtctccgtccccatccttccatttccagccccc
atatcttgaagggtgagacaggaaggtgaggcctctgagtctaggagtacaaaggcctag
attatagcccagctctgctaggcagaggcgtcgttcctggcccattctcttccaccccag
GTCTGGAGGAGTGCGGGCACATCAGTGTCTCAGCCCCCATCGTCCACCTGGGGGATCCCA
TCACAGCCTCCTGCATCATCAAGCAGAACTGCAGCCATCTGGACCCGGAGCCACAGATTC
TGTGGAGACTGGGAGCAGAGCTTCAGCCCGGGGGCAGGCAGCAGCGTCTGTCTGATGGGA
CCCAGGAATCTATCATCACCCTGCCCCACCTCAACCACACTCAGGCCTTTCTCTCCTGCT
GCCTGAACTGGGGCAACAGCCTGCAGATCCTGGACCAGGTTGAGCTGCGCGCAGGCT
gtaagtccttccagccatccaactactctgcctccaacaccctcctgccaatactaataa
gaatattaccagccgggcacgttggctcacgcctgtattcccagcactttgggaggccga
ggcaggcggatcacctgaggtcaggagttcatgatcagcctggccagcaaggcgaaaccc

Exon  3 +      10222      10345   1   Internal    124    88        Good
ctgcaacttagcttcccccagggctgcccttccagagccactctgcctggagacaggggg
acagacaaggtgacaacagaggaaccaagccagggcaaggcaacagggccagctggtccc
agaggaagctttctgagtggtcccacccaaagccctcacactcttcccacccacatgcag
ACCCTCCAGCCATACCCCACAACCTCTCCTGCCTCATGAACCTCACAACCAGCAGCCTCA
TCTGCCAGTGGGAGCCAGGACCTGAGACCCACCTACCCACCAGCTTCACTCTGAAGAGTT
TCAA
gtgaggaggggcccccaccttggtcccctccctttggattctggggtagggcatgggtag
gatgctgggcatgcctctgggagggagaagggagcctcgctttcttcctctgcttggcac
ccaagcctggactattggcaggagccggggcaactgtcagacccaaggggactccatcct

Exon  4 +      10487      10674   2   Internal    188    82        Good
gacccacctacccaccagcttcactctgaagagtttcaagtgaggaggggcccccacctt
ggtcccctccctttggattctggggtagggcatgggtaggatgctgggcatgcctctggg
agggagaagggagcctcgctttcttcctctgcttggcacccaagcctggactattggcag
GAGCCGGGGCAACTGTCAGACCCAAGGGGACTCCATCCTGGACTGCGTGCCCAAGGACGG
GCAGAGCCACTGCTGCATCCCACGCAAACACCTGCTGTTGTACCAGAATATGGGCATCTG
GGTGCAGGCAGAGAATGCGCTGGGGACCAGCATGTCCCCACAACTGTGTCTTGATCCCAT
GGATGTTG
gtgggtgatgcaggggagggaggggatccccaaaatgggcagacactgagaggaatggag
agggaaacacagaactagcgacagacaagaagacactggaagacctagagacagaggcac
agaagagggacagagacaaagaaaggtgcagctggagacagagaaatggggacacagacc

Exon  5 +      11112      11332   0    Initial    221    51    Marginal
atgttaggcactgctctaggtactggggatacaaagcatcaaaaatgccctcagaatgtt
agattcaagtgggggggaaaataagatagaatttcagatagcaataagcagaaaggagaa
attaaaggaggagaagggcatagagagagaggggggaaggggagcactggctattttaat
ATGCTGGTCAAGAAAGGCCTCACTAAGAGGGTGACAATTGAGCAGATCCTTGAAGGAAAT
GAGGGAGCAAGCCGCTGGATATCTGGAGGGAAAACATTTCAAGCAGAAGTAACAACCAGT
GCAAAGGCCCTGGGGCAAGAGCGGAAACAGAGACCTAGAGAGAAACAAAGACACATAGAG
ATCGAACCACAGAAACGTGTCATTGGCAACGTGGACAGATG
gtgaaccacagacagggagacaagagggagctaaggcagagccctctagggtgggatagg
gagaccttctgacagccccactccttgcagtgaaactggagccccccatgctgcggacca
tggaccccagccctgaagcggcccctccccaggcaggctgcctacagctgtgctgggagc

Exon  6 +      11423      11592   1   Internal    170   100   Excellent
ggggcaagagcggaaacagagacctagagagaaacaaagacacatagagatcgaaccaca
gaaacgtgtcattggcaacgtggacagatggtgaaccacagacagggagacaagagggag
ctaaggcagagccctctagggtgggatagggagaccttctgacagccccactccttgcag
TGAAACTGGAGCCCCCCATGCTGCGGACCATGGACCCCAGCCCTGAAGCGGCCCCTCCCC
AGGCAGGCTGCCTACAGCTGTGCTGGGAGCCATGGCAGCCAGGCCTGCACATAAATCAGA
AGTGTGAGCTGCGCCACAAGCCGCAGCGTGGAGAAGCCAGCTGGGCACTG
gtgaggcagagggcaacctggagagcctgaggtggtgggggcagggggcagggtaagtcg
ggctcgagctggccctagaatggcccagcgatccaaggctcagagtcctgtccacccctc
accaggtgggccccctccccttggaggcccttcagtatgagctctgcgggctcctcccag

Exon  7 +      11748      11871   0   Internal    124    60    Marginal
gcgtggagaagccagctgggcactggtgaggcagagggcaacctggagagcctgaggtgg
tgggggcagggggcagggtaagtcgggctcgagctggccctagaatggcccagcgatcca
aggctcagagtcctgtccacccctcaccaggtgggccccctccccttggaggcccttcag
TATGAGCTCTGCGGGCTCCTCCCAGCCACGGCCTACACCCTGCAGATACGCTGCATCCGC
TGGCCCCTGCCTGGCCACTGGAGCGACTGGAGCCCCAGCCTGGAGCTGAGAACTACCGAA
CGGG
gtaaggaggtgatgagaggctgggagcagccaacagtatccagtccaggccccaggcccc
tccccaactggcaccccctcttcttgttccatccacagcccccactgtcagactggacac
atggtggcggcagaggcagctggaccccaggacagtgcagctgttctggaaggtgactcc

Exon  8 +      12463      12676   0   Internal    214    65    Marginal
cctgccctccttcctagaacctagcacaagggaacagagggaaaaggggaggggggtgag
aagcctggaccccagcctggggaggctccgtttgtatgatccatccaccccacctagagg
ctctccttgactcaagatgagctgcacatccccttctctttttcctcctgtgccccacag
CCAGTGCCCCTGGAGGAAGACAGCGGACGGATCCAAGGTTATGTGGTTTCTTGGAGACCC
TCAGGCCAGGCTGGGGCCATCCTGCCCCTCTGCAACACCACAGAGCTCAGCTGCACCTTC
CACCTGCCTTCAGAAGCCCAGGAGGTGGCCCTTGTGGCCTATAACTCAGCCGGGACCTCT
CGTCCCACTCCGGTGGTCTTCTCAGAAAGCAGAG
gtaaagggggctggcagccagaagagcacagaggtcaagcgcatcaattcaaaggctaga
ctgcctgggttaaatctagtcctattggccgggcgcagtggctcacgcctgtaatcccag
cactttgggaggccgaggtgggcagatcatccgaggtcaggagttcaagaccagcctggc

Exon  9 +      14326      14457   1   Internal    132    67    Marginal
atgttgacctaccaaaggtcacccagcctgtaaatagcaaagccaggatttgaacccagg
cttctggctcaagggcctgcattcttttcaccttcattccaccatttcccaccctgtctc
caggcccagctctgaccagactccatgccatggcccgagaccctcacagcctctgggtag
GCTGGGAGCCCCCCAATCCATGGCCTCAGGGCTATGTGATTGAGTGGGGCCTGGGCCCCC
CCAGCGCGAGCAATAGCAACAAGACCTGGAGGATGGAACAGAATGGGAGAGCCACGGGGT
TTCTGCTGAAGG
gtgaggctggcctggaaagttgggcagggccagggacaaagggaggcagtgcttatctga
caataggcatgggacaacctgaactgcccaagagacatggattctccagcctttcttgat
ccttcgttgttctcatttcatatcctcataatcaggaagttcttcctacagtctaacctg

Exon 10 +      14852      14953   1   Internal    102    92   Excellent
ctagctctctcttccacttttcttccctaattctcatcaaatgatctaaagaagatattg
tggaggttaaccctgaatcatgaggccaggttagccctcactagaggtctgaggctagct
cctgatcattagcacaggttaggccctaacagaagtgcctaccccattttctctctacag
AGAACATCAGGCCCTTTCAGCTCTATGAGATCATCGTGACTCCCTTGTACCAGGACACCA
TGGGACCCTCCCAGCATGTCTATGCCTACTCTCAAGAAATGG
gtttgtcaactatcaggcccctttccagaatcctctcctctctctcccaaggctctgcct
ggtccccagcaatcagaagtatagggaacattgccttcctaccatacttccagccctgga
gaggatctctcccaatcccctggcttacactggatccctacagctggacagaaatcaggt

Exon 11 +      15906      16034   1   Internal    129    85        Good
atggaatctggattaaatccctgggaaaaatgaggcttgggcatgagtccccttggactc
ttttctcacccaccccacagtgtctgggaagccacaagaagtccaaccgggctcttgctc
tgccccactcccttcagcccccgcacctctctcttcccatagctccctcccatgccccag
AGCTGCATCTAAAGCACATTGGCAAGACCTGGGCACAGCTGGAGTGGGTGCCTGAGCCCC
CTGAGCTGGGGAAGAGCCCCCTTACCCACTACACCATCTTCTGGACCAACGCTCAGAACC
AGTCCTTCT
gtgagtctatcctcagttcccccacagccccagaaggcctggaagggggtgctcagctgc
cacggaggcagctttaccatccaggcctatgctgaccgtacacccctcccagccgccatc
ctgaatgcctcctcccgtggctttgtcctccatggcctggagcccgccagtctgtatcac

Exon 12 +      16051      16287   1   Internal    237    80        Good
cctctctcttcccatagctccctcccatgccccagagctgcatctaaagcacattggcaa
gacctgggcacagctggagtgggtgcctgagccccctgagctggggaagagcccccttac
ccactacaccatcttctggaccaacgctcagaaccagtccttctgtgagtctatcctcag
TTCCCCCACAGCCCCAGAAGGCCTGGAAGGGGGTGCTCAGCTGCCACGGAGGCAGCTTTA
CCATCCAGGCCTATGCTGACCGTACACCCCTCCCAGCCGCCATCCTGAATGCCTCCTCCC
GTGGCTTTGTCCTCCATGGCCTGGAGCCCGCCAGTCTGTATCACATCCACCTCATGGCTG
CCAGCCAGGCTGGGGCCACCAACAGTACAGTCCTCACCCTGATGACCTTGACCCCAG
gtaaggggagacgggggctgggcagagatggctgtttggagggtaccccacccaaaggat
gctgattttgagagtagctggggactgactttgaatcccctggtcggagggaggagaccc
agccttcccaacatgcattctaacttcttccggccctgccctcactgcagaggggtcgga

Exon 13 +      16458      16551   1   Internal     94    81        Good
ttgaccccaggtaaggggagacgggggctgggcagagatggctgtttggagggtacccca
cccaaaggatgctgattttgagagtagctggggactgactttgaatcccctggtcggagg
gaggagacccagccttcccaacatgcattctaacttcttccggccctgccctcactgcag
AGGGGTCGGAGCTACACATCATCCTGGGCCTGTTCGGCCTCCTGCTGTTGCTCACCTGCC
TCTGTGGAACTGCCTGGCTCTGTTGCAGCCCCAA
gtgagtccctttgagagacctgagatcctgcttcccccacccacagggaacctcaggtcc
agatgggcccatctaagtcccttccagccttcccaaactttggggcccatgtctgagagt
cccagcccccagcttcttctctctgcactaagggcagctgcacctcttcaggtggggtgg

Exon 14 +      17282      17422   0   Internal    141    82        Good
gtgcatggcatgtgtcaggcatgtgtgaggaacatactagtgctttgcaagtggtaccct
ttgtgttccaccagtaacaacagttgaatgtccccacagctgcccggacccagacaggga
cagtggctggggcagacatctgaaatgagccgtgctctcaccccacatccttgtgtgcag
GATGCCTTCCAGCTGCCCGGCCTTGGCACGCCACCCATCACCAAGCTCACAGTGCTGGAG
GAGGATGAAAAGAAGCCGGTGCCCTGGGAGTCCCATAACAGCTCAGAGACCTGTGGCCTC
CCCACTCTGGTCCAGACCTAT
gtgctccagggggacccaagagcagtttccacccagccccaatcccagtctggcaccagc
gatcaggtcctttatgggcagctgctgggcagccccacaagcccagggccagggcactat
ctccgctgtgactccactcagcccctcttggcgggcctcacccccagccccaagtcctat

Exon 15 +      17590      17752   2   Terminal    163    58    Marginal
ggtccagacctatgtgctccagggggacccaagagcagtttccacccagccccaatccca
gtctggcaccagcgatcaggtcctttatgggcagctgctgggcagccccacaagcccagg
gccagggcactatctccgctgtgactccactcagcccctcttggcgggcctcacccccag
CCCCAAGTCCTATGAGAACCTCTGGTTCCAGGCCAGCCCCTTGGGGACCCTGGTAACCCC
AGCCCCAAGCCAGGAGGACGACTGTGTCTTTGGGCCACTGCTCAACTTCCCCCTCCTGCA
GGGGATCCGGGTCCATGGGATGGAGGCGCTGGGGAGCTTCTAG
ggcttcctggggttcccttcttgggcctgcctcttaaaggcctgagctagctggagaaga
ggggagggtccataagcccatgactaaaaactaccccagcccaggctctcaccatctcca
gtcaccagcatctccctctcctcccaatctccataggctgggcctcccaggcgatctgca

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