GENSCAN 1.0 Date run: 14-Jan-104 Time: 18:54:08 Sequence TUFT1_1 : 45677 bp : 46.18% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Init + 1263 1322 60 2 0 82 95 108 0.966 12.16 gcccacctcacctcctcgcctatcgttagttctctgcgaaaccgcgaactgggggcgcgg cctatcttcagccccgcccctgatgggcctatacaagggggcggttccgcgcgcgcccgc ccagttggagccagacagcggggtggacaagtggcgtgtgtgctgcgaccccgagggaag ATGAACGGGACGCGGAACTGGTGTACCCTGGTGGACGTGCACCCAGAGGACCAGGCGGCG gtaagaaaaagcgctctcgctgtcttctccgttttgtattcccggtttctaagtccgccc cttccgtgccccgcgccgtgttggctgacatcacctggtgcccggctcgcgcggtcagcc ctgcgcggcgcttctctctttttattcttttgcctgcgacgggcagtgggagtcgcgggg 1.02 Intr + 3474 3528 55 2 1 58 78 40 0.112 -1.45 tttttttttctgttggtagagatgggatttcaccatgttgcccaggctagtctcgaactc ctgggctcaagcagtctgcccaccttggcctcccaaaggcttgggattacaggcatgagc cactacatctggccccttttactctttcttgatgtttttgctctttgtctggtggggcag AAAAAATTACTAAGAGAAAATAATGGACAAGGAATTCAGATGGTCTCCATCATAG gttagtttgaagctaaccagagacctctagagcaagggagagacagaaattcccttttat tccttttttctaggctgaacttgagacttattttactccagagctgggaatgaagtaatc attgcccagatctgatcttggagacattcctgggcccttaagggaggggaggagatggtg 1.03 Intr + 18334 18659 326 2 2 34 47 356 0.003 21.59 cctttaccttctcccatttatgatactaaatatttaatagtataatattatcatatttaa atattttctctgcatacatttagaaccacatcagacattgttatactttttgctttaatc atcaaatgtaacttagaaaacctaagaggggctttccagccccagccccggcccctacag CCACCGAGATGTTGATGCCTAAGAACCGGATTGCCATTTATGAACTCCTTTTTAAGGAGG GAGTCATGGTGGCCAAGAAGGATGTCCACATGCCTAAGCACCGGGAGCTGGCAGACAAGG ATGTGCCCAATCTTCATGTCATGAAGGCCATGCAGCCTCTCAAGTCCCGAGGCTACGTGA AGGAACAGTTTGCCTGGAGACATTTCCACTGGTACGTTACCAATGAGGGCATCCAGTATC TCCGTGATTACCTTCATCTGCCCCGGAGATTGTGCCTGCCACTCTATGCTGCAGCCGTCC AGAGACTGGAAGTCCTCAGCCTAAAG gtctgaagggtgagcgacctgcaagactcacaagagggaaagcggacagagataacctac agacggagtgctgtgccgcctggtgccgacagcaaagctgaggctggggctgggtcagca accgaattccagtttagaggtggatttggttgaggatgtggtcagccacctcagtaaaat 1.04 Intr + 23481 23582 102 2 0 102 121 68 0.976 11.87 ctgtgtggcttctgttagaagttcggaaacgaatttttggagaggaaagtcagactaatc cttcaagtcttttgagaaacaggtcttctgcattagctgaggggcaggagttctgggctt gccatgtggtgtctgagccatctctctctctctctctctctctcatctctctttggccag GCGGGCAGGAAGACCTATGCCATGGTGTCCAGCCACTCAGCTGGTCATTCTCTGGCTTCA GAACTGGTGGAGTCCCATGATGGACATGAGGAGATCATTAAG gtaagcttagttcacctccaacttttctccctgtcctcttcctccctgcacgtatatgag aaggagcagttgatgttgttgccaaagggagcttgtggtttgatggaaggaaccagacct gagctgctagttcctggcaatctcctagaaatatcttaattaataccaggagactacagt 1.05 Intr + 24800 24886 87 1 0 89 64 87 0.980 6.57 agtagaactgatagaccaaaaagtaaatatatttttaggtcttctgatccgaatcaccaa attccacccagtaaattggtggtaacaatttaccctcccaccagcactatatgaagctgc ctatttttgtatagttaatttaatttgaggtttcttaactaaatggtgttcttatttcag GTGTACTTGAAGGGGAGGTCTGGAGACAAGATGATTCACGAGAAGAATATTAACCAGCTG AAGAGTGAGGTCCAGTACATCCAGGAG gtgggcaccccttacctctcacgcagtgcctaggtcatttctctaaatctcacatttttt gtgactgtcttcttttgtggattctggtttttccccttctttttcctttatgtctctgaa atgccaccatgccctcccgtgtgtcaaatatataacttttgaccatacctgatccattaa 1.06 Intr + 25421 25510 90 1 0 115 90 35 0.989 6.59 ccccaacaagaatgtcagctgtagctccacttgaccaaggtccctccctccatcctgcag ccagtcgttaggacagtgcctgactcgcagtacaggccagggatggggcacagagttggg tgagttggcatgctctctttctctaccctaaagctcaagtttcttcccctcccctcccag GCCAGGAACTGCCTACAGAAGCTCCGGGAGGATATAAGTAGCAAGCTTGACAGGAACCTA GGAGATTCTCTCCATCGACAGGAGATACAG gtaataggaaatggtccatggttgggtccccaccgaggaggtggggttgtgccaggcagt ctcatttaccaattacccagtgtgtgctaaatctagcatccctgccaggaatggagaaaa tagaggtgatgctggcttctctggagcactcacaatctggttaggactctccagccgatg 1.07 Intr + 27059 27124 66 1 0 95 92 31 0.907 3.30 tttcttcattccttcctttttctccctccctttctttttctctctccctccccctccctt tcaccttcctctccctctccctgtccttctctttctaagatttgagtgttaggagaataa tgtttcaaagttggttgctttcatctgttttaactaccaattttatttttctttgaacag GTGGTGCTAGAAAAGCCAAATGGCTTTAGTCAGAGTCCCACAGCCCTGTACAGCAGCCCA CCTGAG gtaggtaacagaggacaccatggtggctccgcttagccaggggcaggattgcctcctccc catccttttgtttattgctttctctctctctctctctctcattaaatacaagagtagtag ttgacataaaaattcaaacacagagaaatacaaagagtagaaattctccttccccaatct 1.08 Intr + 30553 30666 114 0 0 93 78 103 0.999 10.44 attgaataactcagaattcctggctgcctaaggtaactctccccttgtgtgatgacagtt cttttttgagggtggtctggacgagatggtccaaaccagtgtgtgcctgggaggggggac cttttcttactgagtcagaaacttgagggcttccccttcccttccttgttctggctgtag GTGGACACCTGTATAAATGAGGATGTTGAGAGCTTGAGGAAGACGGTGCAGGACTTGCTG GCCAAGCTTCAGGAGGCCAAGCGGCAACACCAGTCAGACTGTGTGGCTTTTGAG gtgagatttgggatttggggagaaggtgccctaagggatgggctactgaacacaggtgcc agtgatgtctcagcttggacttcctgtctttctggctgagtgccacaaactggaaaggca aggctgtgaagcctggaacgcttgtctgcttttccctctcctggacgtttacactgttta 1.09 Intr + 35166 35294 129 2 0 106 43 113 0.811 9.49 ctggagtgctgaggtggtcctgtgcagtgaaggggaggtggtggtgagcccatcagtgtc accacctttctcccgtcatggctccagagccgcccaggttcctgggttcttttctaaggt ttttttccatgtttgctcttttttccacaccatttaacatattcctgctccgtgttttag GTCACACTCAGCCGGTACCAGAGGGAAGCAGAACAAAGTAATGTGGCCCTTCAGAGAGAG GAGGACAGAGTGGAGCAGAAAGAGGCAGAAGTCGGAGAGCTGCAGAGGCGCTTGCTAGGG ATGGAGACG gtaaccgggggatcttgcttgtcagtgcctggactcctgggctggaaggggcctgcaggt ggatcgaaacggttgccgagacccttcttttccaagcctctccagaaaagcacacttcgc accttcctttggcagatcccttggaatacattttagccttcaaggaattagcctccccct 1.10 Intr + 35807 35901 95 1 2 55 78 119 0.954 6.36 agagtgggaagggttctcctcatcaagggatggctccccatcaaaccagctcatcttgct gctctttggcagctgtccaggcccagtaggggctgagtcccagcctggcgcccatcttag cccaaacgcagaaactgttgccatcttctcatcctagattttcttttgtggcccacccag GAGCATCAGGCCTTACTGGCGAAAGTGAGGGAAGGGGAGGTGGCCCTAGAGGAACTTCGG AGCAACAATGCTGACTGCCAAGCAGAACGAGAAAA gtaagggcttggctcttgttcacggtgaagttgggttgcagggaggggagggcaggccat acagcctgttgctcctgtggtggcctggtctggggaggaagctggtgctgatgtcagatc ttccagctctgactcaccgtgagcttgctcagggtggagccccacccaagagataccatt 1.11 Intr + 39617 39722 106 2 1 111 111 162 0.869 21.02 ctcagtgcttccaatgtgatattctaaggtacccaccacctactcttcagagcagcctac cagggaatcaggcaaagggaatcatattaatgggaacctcccaagctcaaggctcttcct gtgactgggtaaataagtgatcttgttccattgcctcagccttctggtctttatccccag GGCTGCTACCCTGGAAAAGGAAGTGGCCGGGTTGCGGGAGAAGATCCACCACTTGGATGA CATGCTCAAGAGCCAGCAGCGGAAAGTCCGGCAAATGATAGAGCAG gtaagttgggctggtttgtaacctgccctcggggagtcaccccaagtctatgctcttatt tgtttcctagggagcttgacttatattcatgcatttcccatgtcaaacatttatagctac caattaccaggttcaggttattaggatttgcttttctcccatctttcccctactgttttg 1.12 Intr + 40545 40628 84 2 0 68 85 141 0.957 11.82 tcccacccctgggataatcaagagtctaatattgactgaaaggaggcctttgtagaaaag ctaatgaagtcatatggagttgcagggctctgctgccttccccagcagctggggtgaagt ctggtgagtgtgtaatgagtcattgcaaaatgagctccagtgtctcccacacctttgcag CTCCAGAATTCAAAAGCTGTGATCCAGTCAAAGGACGCCACCATCCAGGAGCTCAAGGAG AAAATCGCCTATCTGGAGGCAGAG gtgtgtgtgctgggcagcccagcaggggaacaggactcttgaagagaaggtggacataag ggagacagaggttatgggaggggtctttgtcatgtcttgctgttgctctgaagtgaatac ctagggtggttggttgactttcagttcagctgaataaacattttctgagaaccttcagga 1.13 Intr + 41838 41938 101 2 2 59 109 91 0.992 7.21 gataagcgcaatctatggtaatgaagatgaggcaagtgggtatccaggtggtggcacgca tggtgggggtagaggcaacagcagcataaacacaggcagagagaccagaatgcactagct gaacgtggcacccgggaagccagaaaaaggccaactctaacccctaagcttgtgttacag AATTTAGAGATGCATGACCGGATGGAACACCTGATAGAAAAACAAATCAGTCATGGCAAC TTCAGCACCCAGGCCCGGGCCAAGACAGAGAACCCGGGCAG gtgagtgagcgtgtgtagatagaatggggccagggaggaggggagaaggagggacagagc tctgtagaacctttagtgctaaggcaagaacaaggctcctttaaatccaactttcctccc tcagtctgacccactgtttgccggaaccattttctagcccaattagagtagaacctgtta 1.14 Term + 42540 42603 64 0 1 79 49 83 0.878 0.86 aaatcttcccctagttgtcactgataattactgttttaaagcacttggaacccaagtgat cagccagcactgcagtgtaagattccagaggccaatgtgaagattccaggggctctgtga agggtgggccacaacacagctgttcccagcacaactcagtgtttccaaccttcttttcag TATTAGGATATCCAAGCCGCCTAGCCCGAAGCCCATGCCTGTCATCCGAGTGGTGGAAAC CTGA gctgcctggagatggttgctgccattgctgctgcctctgcctcggagaagcccactgccc ctgttggctgttaacactgcctttgacttcctgactgtcccctggctgcacccaggactt cgggctcctgtgtctcaccattcccaagcccctggccactctaagctgggcagacggagc Predicted peptide sequence(s): >TUFT1_1|GENSCAN_predicted_peptide_1|492_aa MNGTRNWCTLVDVHPEDQAAKKLLRENNGQGIQMVSIIATEMLMPKNRIAIYELLFKEGV MVAKKDVHMPKHRELADKDVPNLHVMKAMQPLKSRGYVKEQFAWRHFHWYVTNEGIQYLR DYLHLPRRLCLPLYAAAVQRLEVLSLKAGRKTYAMVSSHSAGHSLASELVESHDGHEEII KVYLKGRSGDKMIHEKNINQLKSEVQYIQEARNCLQKLREDISSKLDRNLGDSLHRQEIQ VVLEKPNGFSQSPTALYSSPPEVDTCINEDVESLRKTVQDLLAKLQEAKRQHQSDCVAFE VTLSRYQREAEQSNVALQREEDRVEQKEAEVGELQRRLLGMETEHQALLAKVREGEVALE ELRSNNADCQAEREKAATLEKEVAGLREKIHHLDDMLKSQQRKVRQMIEQLQNSKAVIQS KDATIQELKEKIAYLEAENLEMHDRMEHLIEKQISHGNFSTQARAKTENPGSIRISKPPS PKPMPVIRVVET