GENSCAN 1.0 Date run: 14-Jan-104 Time: 20:53:01 Sequence NR1I3_1 : 10896 bp : 49.22% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Intr + 908 1014 107 0 2 128 14 76 0.917 4.13 ctcccaaagttctgggattacaggtgtgagccaccgtgcccagcccctagtctcttaaaa actttttttgggggagccttgtggaactgtcacacctcttcttttagtactgacatactg cgtgtgaaaaagcttgctctgtctgtctgcctgtctctctctctctctctctcttcccag CTTGTTCAGGATCTCTGTACACAGAAGGCTGCAGATGTAGCCTTAAACTCATCAACAGGG AAAATCTCGATGAGTCTAATAAGCAGCAGCTTCCAATGAGTCACAAG gttcccacccactggagtccctccccgtgtgccaccaaccagcacttttgtcatgctggg aaaacctcccacccaggcctttgccctgagtccagggtctgtgccctaaccccacagtca ctgagagcaactggaggccacataaaacagacatctcttgttttccagatactacgggtc 1.02 Intr + 2768 2907 140 1 2 87 94 103 0.981 10.06 cagagcaagaacttgtgtcagaaaaaaaagaaaaagaaaaagaaaaagaaaaccacaaaa gataacgccagggatcaagtcaagggcatgtttggtttggtttggaaagagactctctag aagggacagaaaagggtcaagggtggcccaaaactgactgctgacccctcctacattcag GAGTCTGTGACAGCCACCCCAACACGTGACGTCATGGCCAGTAGGGAAGATGAGCTGAGG AACTGTGTGGTATGTGGGGACCAAGCCACAGGCTACCACTTTAATGCGCTGACTTGTGAG GGCTGCAAGGGTTTCTTCAG gtgagagtctcctccccaatggaaatagccctccaaaccaaactccctattagtcagcct ttacaccctcgctggtgcccaagcctgtccagctacattactcctttatcttagagtcta actaccctgtggctggcatcctacatcttgccaaacacatcactgtataaactggtggca 1.03 Intr + 3389 3519 131 2 2 102 79 29 0.957 3.74 gatcctgtgttgccatggaaatgcttgagatgtgttggatactatccacccctggggacc tttgggcacagctcagattagtccatttcaccagattcccaggtcttttagaccatgtca tctcagcccctcacctatccattgcatcccagactctaacaacatctctgtgtctcacag GAGAACAGTCAGCAAAAGCATTGGTCCCACCTGCCCCTTTGCTGGAAGCTGTGAAGTCAG CAAGACTCAGAGGCGCCACTGCCCAGCCTGCAGGTTGCAGAAGTGCTTAGATGCTGGCAT GAGGAAAGACA gtgagttggccccctacatctcaagaatccattgactgcgtctgtctttgtccttgttcc caacagtgcattctctacatagcaggcacagtactctttttgaaactagttggattatgt cactattcactcaagacatccaatggctccccatctcaaagtacgtgatctcatgatcta 1.04 Intr + 5801 5828 28 0 1 126 77 6 0.544 0.47 cagataaaggtttatttgaaaggattatttgattatttttgaaggattatttgaaaacat catataaagtgatgttctaggtatgaagacccctccctctacactgtttccccaaaagcc ctcgcacctttcctcacatctttcatactttcctcgccacccttcccttctcccccacag TGCAGTTTTCTGCTGCAGTTCTTCACAG gttggtggaagtgtataggagccccctgcctcctggagcctctaggactttagccaagcc caagaaagtctcaggaattccccccactgcccccatccttcgttgtgcagggcagctgag gggccccagatcagggaccagcagagagaaatgctctgctggtctcaacagctttgtcat 1.05 Intr + 5939 6197 259 2 1 101 84 122 0.573 10.57 tctttcatactttcctcgccacccttcccttctcccccacagtgcagttttctgctgcag ttcttcacaggttggtggaagtgtataggagccccctgcctcctggagcctctaggactt tagccaagcccaagaaagtctcaggaattccccccactgcccccatccttcgttgtgcag GGCAGCTGAGGGGCCCCAGATCAGGGACCAGCAGAGAGAAATGCTCTGCTGGTCTCAACA GCTTTGTCATGATCTCTTGCCTGGCACAGTGATACTGTCGGCAGAAGCCCTGGCATTGCG GCGAGCAAAGCAGGCCCAGCGGCGGGCACAGCAAACACCTGTGCAACTGAGTAAGGAGCA AGAAGAGCTGATCCGGACACTCCTGGGGGCCCACACCCGCCACATGGGCACCATGTTTGA ACAGTTTGTGCAGTTTAGG gtgagcaccgacaggatttgggttggaatacaactaaaagggcacccaaaaatgctggtc tgaaggagaggggtgtatgccatgcactgatactgagaacagatctccagaaccccagcc tgagcaggcttctcagcaaggaactcttccaagataaggctggcgaggcctaaaggaggg 1.06 Intr + 6450 6559 110 2 2 48 117 96 0.622 7.58 gtgtatgccatgcactgatactgagaacagatctccagaaccccagcctgagcaggcttc tcagcaaggaactcttccaagataaggctggcgaggcctaaaggagggccctagggccag agcctctagctaatgttctgatcattgcagcctccagctcatctgttcatccatcaccag CCCTTGCCCACCCTGGCCCCTGTGCTGCCTCTGGTCACACACTTCGCAGACATCAACACT TTCATGGTACTGCAAGTCATCAAGTTTACTAAGGACCTGCCCGTCTTCCG gtgagtgacctcccctcatctttcaggaggcaaacacttcagtaaattgtatatccaccc cgaaaagtcactgactacaaattatcacatgcgtcagcctttccaagcattaggtcttga attcccagctttggttttaaatgtgccaatcagaactgggagttcttctccatctctgaa 1.07 Intr + 7892 8037 146 2 2 79 69 129 0.999 10.03 gtggcacacgcctgtaatccaagctacttgggaggctgaggcaggagaattgcttgaacc caggaggcagaggttacagtgagcagagatcacgccactgcactccagccagggtgacag tgagactctgtctcagaaaaaaaaaaattgaaaagtgtccttgtttcctgctttccacag TTCCCTGCCCATTGAAGACCAGATCTCCCTTCTCAAGGGAGCAGCTGTGGAAATCTGTCA CATCGTACTCAATACCACTTTCTGTCTCCAAACACAAAACTTCCTCTGCGGGCCTCTTCG CTACACAATTGAAGATGGAGCCCGTG gtgagatggtgctagagcaatagggggcatgtgtcctcatggtacaggatgtggtcaggt gacctagaggctcctaatcctagtatctcccacagtggggttccaggtagagtttttgga gttgctctttcacttccatggaacactacgaaaactgcagctccaagagcctgagtatgt 1.08 Intr + 8133 8249 117 1 0 50 93 85 0.964 5.64 atcgtactcaataccactttctgtctccaaacacaaaacttcctctgcgggcctcttcgc tacacaattgaagatggagcccgtggtgagatggtgctagagcaatagggggcatgtgtc ctcatggtacaggatgtggtcaggtgacctagaggctcctaatcctagtatctcccacag TGGGGTTCCAGGTAGAGTTTTTGGAGTTGCTCTTTCACTTCCATGGAACACTACGAAAAC TGCAGCTCCAAGAGCCTGAGTATGTGCTCTTGGCTGCCATGGCCCTCTTCTCTCCTG gtgagcacctcccaaagcccagagccttttgctgcaccacctctgcccaaatactcagct ccttgagtccatccacccaggccttctagcctagctatcaaacctgcagactaggtctat cccagcctcagtccccggggcaccacgcaggcccacccctgccacccaacttgtccttcc 1.09 Intr + 8433 8553 121 1 1 78 72 158 0.699 12.75 agcacctcccaaagcccagagccttttgctgcaccacctctgcccaaatactcagctcct tgagtccatccacccaggccttctagcctagctatcaaacctgcagactaggtctatccc agcctcagtccccggggcaccacgcaggcccacccctgccacccaacttgtccttcccag CTCCCTATCTTACAGACCGACCTGGAGTTACCCAGAGAGATGAGATTGATCAGCTGCAAG AGGAGATGGCACTGACTCTGCAAAGCTACATCAAGGGCCAGCAGCGAAGGCCCCGGGATC G gtacggtgggacactgagggcttggaggccacaccagggcaggaaggggttggtgaaaca ttgagcttgggaggaatgtttttttactgtcctttccttagggaattcaggtatcgtggg gtctagtccttccccctggccatccctgtctcacatcgtttcagcatccaaattgctgta 1.10 Term + 9440 9569 130 2 1 70 54 230 0.999 15.45 gaggccccctggaggacctttggaacctctgatagtctgtcataccagagcatgattttc tctaatgttcagacctggcttcactgaggaatagttcaggggatcagggcctagagacaa gactcccaactgccttatttccctcctgttttcctggcaaccccactacttcctccaaag GTTTCTGTATGCGAAGTTGCTAGGCCTGCTGGCTGAGCTCCGGAGCATTAATGAGGCCTA CGGGTACCAAATCCAGCACATCCAGGGCCTGTCTGCCATGATGCCGCTGCTCCAGGAGAT CTGCAGCTGA ggccatgctcacttccttccccagctcacctggaacaccctggatacactggagtgggaa aatgctgggaccaaagattgggccgggttcaaagggagcccagtggttgcaatgaaagac taaagcaataactgcctcttcatgcggtcatggggatagtgggggtgaccataggaacaa Predicted peptide sequence(s): >NR1I3_1|GENSCAN_predicted_peptide_1|429_aa XCSGSLYTEGCRCSLKLINRENLDESNKQQLPMSHKESVTATPTRDVMASREDELRNCVV CGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLD AGMRKDMQFSAAVLHRAAEGPQIRDQQREMLCWSQQLCHDLLPGTVILSAEALALRRAKQ AQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPLPTLAPVLPLVTHFADI NTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRY TIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRD EIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAM MPLLQEICS